Transcript : dd_Smed_v6_26079_0_1 S. mediterranea

Length  452     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_728295.1 Drosophila melanogaster Cytochrome c oxidase subunit VIb 2.0E-18 126-341 216 1
XP_003743469.1 Metaseiulus occidentalis cytochrome c oxidase subunit 6B2-like 8.0E-20 132-332 201 1
XP_001653503.1 Aedes aegypti cytochrome c oxidase,-subunit VIb, putative 2.0E-19 126-341 216 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11387 PANTHER CYTOCHROME C OXIDASE POLYPEPTIDE VIB 2.8E-24 135-332 198 1
SSF47694 SSF IPR003213 Cytochrome c oxidase subunit h 1.24E-24 126-335 210 1
G3DSA:1.10.10.140 GENE3D IPR003213 Cytochrome C oxidase subunit h 1.2E-23 126-335 210 1
PF02297 PFAM IPR003213 Cytochrome oxidase c subunit VIb 6.8E-13 153-311 159 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
3-344 342 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105065 4.2E-32 3 110.6 0.45353982 132-336 205 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)