Transcript : dd_Smed_v6_259_0_1 S. mediterranea

Length  623     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524819.1 Drosophila melanogaster Ribosomal protein L12 3.0E-75 88-573 486 1
NP_000967.1 Homo sapiens ribosomal protein L12 4.0E-70 88-567 480 1
XP_001865531.1 Culex quinquefasciatus 60S ribosomal protein L12 4.0E-77 88-567 480 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.10.250 GENE3D IPR020783   8.6E-23 328-516 189 1
PTHR11661:SF2 PANTHER 60S RIBOSOMAL PROTEIN L12 1.7E-86 82-570 489 1
SM00649 SMART IPR000911 Ribosomal protein L11/L12 1.1E-50 124-516 393 1
PF00298 PFAM IPR020783 Ribosomal protein L11, RNA binding domain 2.8E-12 307-513 207 1
SSF54747 SSF IPR020784 Ribosomal L11/L12e N-terminal domain 3.4E-30 82-342 261 1
SSF46906 SSF IPR020783 Ribosomal protein L11, C-terminal domain 4.45E-17 310-525 216 1
G3DSA:3.30.1550.10 GENE3D IPR020784 Ribosomal protein L11, N-terminal domain 1.3E-42 85-324 240 1
PS00359 PROSITE IPR020785 Ribosomal protein L11 signature. 0.0 475-519 45 1
PF03946 PFAM IPR020784 Ribosomal protein L11, N-terminal domain 1.0E-17 121-291 171 1
PTHR11661 PANTHER IPR000911 60S RIBOSOMAL PROTEIN L12 1.7E-86 82-570 489 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
88-573 486 1
282-539 258 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300123 1.7E-72 1 242.2 0.77207065 96-576 481 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)