Contig : dd_Smed_v6_259_0_1 S. mediterranea

Id  dd_Smed_v6_259_0_1 Length  623    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524819.1 Drosophila melanogaster Ribosomal protein L12 3.0E-75 88-573 486 1
NP_000967.1 Homo sapiens ribosomal protein L12 4.0E-70 88-567 480 1
XP_001865531.1 Culex quinquefasciatus 60S ribosomal protein L12 4.0E-77 88-567 480 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.10.250 GENE3D IPR020783   8.6E-23 328-516 189 1
PTHR11661:SF2 PANTHER 60S RIBOSOMAL PROTEIN L12 1.7E-86 82-570 489 1
SM00649 SMART IPR000911 Ribosomal protein L11/L12 1.1E-50 124-516 393 1
PF00298 PFAM IPR020783 Ribosomal protein L11, RNA binding domain 2.8E-12 307-513 207 1
SSF54747 SSF IPR020784 Ribosomal L11/L12e N-terminal domain 3.4E-30 82-342 261 1
SSF46906 SSF IPR020783 Ribosomal protein L11, C-terminal domain 4.45E-17 310-525 216 1
G3DSA:3.30.1550.10 GENE3D IPR020784 Ribosomal protein L11, N-terminal domain 1.3E-42 85-324 240 1
PS00359 PROSITE IPR020785 Ribosomal protein L11 signature. 0.0 475-519 45 1
PF03946 PFAM IPR020784 Ribosomal protein L11, N-terminal domain 1.0E-17 121-291 171 1
PTHR11661 PANTHER IPR000911 60S RIBOSOMAL PROTEIN L12 1.7E-86 82-570 489 1

2 ORFs

Contig Location Length Strand Sequence
88-573 486 1
282-539 258 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300123 1.7E-72 1 242.2 0.77207065 96-576 481 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)