Contig : dd_Smed_v6_258_0_1 S. mediterranea

Id  dd_Smed_v6_258_0_1 Length  3090    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
YP_008592433.1 Schmidtea mediterranea NADH dehydrogenase subunit 1 6.0E-138 2175-3020 846 1
YP_004936155.1 Dugesia japonica NADH dehydrogenase subunit 1 4.0E-68 2175-3011 837 1
YP_009032783.1 Folsomotoma octooculata NADH dehydrogenase subunit 1 1.0E-53 2163-3014 852 1

31 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.287.70 GENE3D   7.6E-6 482-580 99 1
PS50253 PROFILE IPR000298 Heme-copper oxidase subunit III family profile. 9.755 590-745 156 1
PF00510 PFAM IPR000298 Cytochrome c oxidase subunit III 5.4E-10 590-745 156 1
SSF81452 SSF IPR000298 Cytochrome c oxidase subunit III-like 1.67E-10 593-745 153 1
PTHR11403 PANTHER IPR024791 CYTOCHROME C OXIDASE SUBUNIT III 1.7E-12 755-916 162 1
SSF81452 SSF IPR000298 Cytochrome c oxidase subunit III-like 4.84E-10 755-916 162 1
PTHR11403:SF3 PANTHER CYTOCHROME C OXIDASE SUBUNIT 3 1.7E-12 755-916 162 1
PS50253 PROFILE IPR000298 Heme-copper oxidase subunit III family profile. 8.727 752-931 180 1
PF00510 PFAM IPR000298 Cytochrome c oxidase subunit III 1.1E-13 752-916 165 1
G3DSA:1.20.120.80 GENE3D IPR013833   7.5E-7 755-913 159 1
PS50253 PROFILE IPR000298 Heme-copper oxidase subunit III family profile. 21.481 974-1270 297 1
PF00510 PFAM IPR000298 Cytochrome c oxidase subunit III 4.6E-32 980-1267 288 1
PTHR11403 PANTHER IPR024791 CYTOCHROME C OXIDASE SUBUNIT III 5.9E-32 986-1273 288 1
PTHR11403:SF3 PANTHER CYTOCHROME C OXIDASE SUBUNIT 3 5.9E-32 986-1273 288 1
G3DSA:1.20.120.80 GENE3D IPR013833   1.8E-31 980-1267 288 1
SSF81452 SSF IPR000298 Cytochrome c oxidase subunit III-like 9.81E-34 977-1267 291 1
PF00119 PFAM IPR000568 ATP synthase A chain 2.2E-5 1524-1898 375 1
SSF81336 SSF IPR000568 F1F0 ATP synthase subunit A 5.36E-7 1656-1898 243 1
PS00449 PROSITE IPR023011 ATP synthase a subunit signature. 0.0 1920-1946 27 1
SSF81336 SSF IPR000568 F1F0 ATP synthase subunit A 8.89E-16 1908-2105 198 1
G3DSA:1.20.120.220 GENE3D IPR000568   5.2E-15 1908-2105 198 1
PR00123 PRINTS IPR000568 ATP synthase A subunit signature 1.1E-9 1911-1976 66 1
PF00119 PFAM IPR000568 ATP synthase A chain 1.5E-14 1908-2108 201 1
PR00123 PRINTS IPR000568 ATP synthase A subunit signature 1.1E-9 2064-2108 45 1
PTHR11432 PANTHER IPR001694 NADH DEHYDROGENASE SUBUNIT 1 2.6E-17 2133-2420 288 1
PTHR11432:SF3 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 2.6E-17 2133-2420 288 1
PF00146 PFAM IPR001694 NADH dehydrogenase 3.9E-20 2175-2417 243 1
PF00146 PFAM IPR001694 NADH dehydrogenase 5.9E-52 2436-3011 576 1
PTHR11432:SF3 PANTHER NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 2.1E-44 2469-3011 543 1
PTHR11432 PANTHER IPR001694 NADH DEHYDROGENASE SUBUNIT 1 2.1E-44 2469-3011 543 1

11 ORFs

Contig Location Length Strand Sequence
1476-1904 429 1
1-276 276 1
2175-2426 252 1
2817-3014 198 1
575-763 189 -1
1947-2111 165 1
1196-1348 153 -1
1960-2088 129 1
1166-1282 117 1
1654-1767 114 1
2506-2613 108 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)