Contig : dd_Smed_v6_255_0_1 S. mediterranea

Id  dd_Smed_v6_255_0_1 Length  721    Open in Genome Browser

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Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523710.1 Drosophila melanogaster Calmodulin 6.0E-99 107-553 447 1
NP_001734.1 Homo sapiens calmodulin 2 (phosphorylase kinase, delta) 1.0E-97 107-553 447 1
NP_503386.1 Caenorhabditis elegans Protein CMD-1 3.0E-99 107-553 447 1

19 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 386-421 36 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.4E-37 314-544 231 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 275-310 36 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 17.303 128-232 105 1
PTHR23050:SF150 PANTHER CALMODULIN 5.4E-117 104-550 447 1
PF13499 PFAM IPR011992 EF-hand domain pair 2.2E-15 146-322 177 1
PF13499 PFAM IPR011992 EF-hand domain pair 6.7E-21 362-541 180 1
PTHR23050 PANTHER CALCIUM BINDING PROTEIN 5.4E-117 104-550 447 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 8.1E-43 113-310 198 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 15.155 455-550 96 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 167-202 36 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 7.2E-9 248-331 84 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 17.972 347-451 105 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 2.5E-9 467-550 84 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 494-529 36 1
SSF47473 SSF EF-hand 6.41E-59 107-544 438 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 8.5E-9 140-223 84 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 14.792 236-340 105 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 5.8E-9 359-442 84 1

4 ORFs

Contig Location Length Strand Sequence
107-553 447 1
232-498 267 -1
317-430 114 -1
267-374 108 -1

17 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF339519 2.5E-70 2 236.4 0.6213592 105-552 448 1
TF318191 6.5E-71 2 238.4 0.60055476 117-549 433 1
TF334804 7.1E-44 2 149.3 0.5963939 117-546 430 1
TF354258 7.2E-104 2 346.8 0.5963939 120-549 430 1
TF101141 2.7E-69 2 233.0 0.60055476 120-552 433 1
TF351552 1.6E-54 2 184.7 0.5755895 120-534 415 1
TF343803 3.1E-6 2 23.0 0.44244105 120-438 319 1
TF315456 2.8E-43 2 147.2 0.57975036 123-540 418 1
TF351233 3.0E-5 2 22.3 0.4965326 123-480 358 1
TF327112 1.5E-39 2 135.1 0.57975036 126-543 418 1
TF351551 1.3E-23 2 82.5 0.5589459 132-534 403 1
TF313209 1.2E-10 2 40.0 0.5631068 132-537 406 1
TF324069 9.1E-37 2 125.5 0.5589459 147-549 403 1
TF329255 3.0E-12 2 45.2 0.54646325 150-543 394 1
TF105558 3.1E-18 2 65.3 0.54646325 156-549 394 1
TF314504 3.3E-8 2 30.1 0.5048544 180-543 364 1
TF105424 8.7E-10 2 34.9 0.40499306 252-543 292 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)