Transcript : dd_Smed_v6_2536_0_1 S. mediterranea

Length  2133     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067457.1, clone H.19.1b unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_004661.2 Homo sapiens 3'-phosphoadenosine 5'-phosphosulfate synthase 2 0.0 179-1957 1779 1
NP_001188399.1 Mus musculus 3'-phosphoadenosine 5'-phosphosulfate synthase 2 0.0 149-1966 1818 1
NP_997727.1 Danio rerio 3'-phosphoadenosine 5'-phosphosulfate synthase 2b 0.0 179-1963 1785 1

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.400.10 GENE3D Sulfate adenylyltransferase 2.3E-60 800-1309 510 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 9.0E-87 176-778 603 1
PF01747 PFAM IPR024951 ATP-sulfurylase 1.1E-66 1274-1945 672 1
G3DSA:3.40.50.620 GENE3D IPR014729 HUPs 2.4E-83 1313-1957 645 1
PTHR11055 PANTHER ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERASE 0.0 179-1963 1785 1
PF14306 PFAM IPR025980 PUA-like domain 1.7E-43 800-1249 450 1
SSF52374 SSF Nucleotidylyl transferase 7.7E-72 1277-1945 669 1
PF01583 PFAM IPR002891 Adenylylsulphate kinase 2.0E-71 248-718 471 1
SSF88697 SSF IPR015947 PUA domain-like 5.47E-45 800-1258 459 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.94E-36 245-763 519 1
TIGR00455 TIGRFAMs IPR002891 apsK: adenylylsulfate kinase 9.3E-72 245-754 510 1
TIGR00339 TIGRFAMs IPR002650 sopT: sulfate adenylyltransferase 2.7E-111 824-1939 1116 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

10 ORFs

Contig Location Length Strand Sequence
128-1966 1839 1
998-1378 381 -1
1550-1717 168 -1
1413-1571 159 -1
349-492 144 -1
1388-1510 123 -1
1083-1196 114 1
1450-1563 114 -1
1891-1995 105 1
545-649 105 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313143 0.0 2 1053.1 0.8373183 177-1962 1786 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)