Contig : dd_Smed_v6_2536_0_1 S. mediterranea

Id  dd_Smed_v6_2536_0_1 Length  2133    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_004661.2 Homo sapiens 3'-phosphoadenosine 5'-phosphosulfate synthase 2 0.0 179-1957 1779 1
NP_001188399.1 Mus musculus 3'-phosphoadenosine 5'-phosphosulfate synthase 2 0.0 149-1966 1818 1
NP_997727.1 Danio rerio 3'-phosphoadenosine 5'-phosphosulfate synthase 2b 0.0 179-1963 1785 1

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.400.10 GENE3D Sulfate adenylyltransferase 2.3E-60 800-1309 510 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 9.0E-87 176-778 603 1
PF01747 PFAM IPR024951 ATP-sulfurylase 1.1E-66 1274-1945 672 1
G3DSA:3.40.50.620 GENE3D IPR014729 HUPs 2.4E-83 1313-1957 645 1
PTHR11055 PANTHER ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERASE 0.0 179-1963 1785 1
PF14306 PFAM IPR025980 PUA-like domain 1.7E-43 800-1249 450 1
SSF52374 SSF Nucleotidylyl transferase 7.7E-72 1277-1945 669 1
PF01583 PFAM IPR002891 Adenylylsulphate kinase 2.0E-71 248-718 471 1
SSF88697 SSF IPR015947 PUA domain-like 5.47E-45 800-1258 459 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.94E-36 245-763 519 1
TIGR00455 TIGRFAMs IPR002891 apsK: adenylylsulfate kinase 9.3E-72 245-754 510 1
TIGR00339 TIGRFAMs IPR002650 sopT: sulfate adenylyltransferase 2.7E-111 824-1939 1116 1

10 ORFs

Contig Location Length Strand Sequence
128-1966 1839 1
998-1378 381 -1
1550-1717 168 -1
1413-1571 159 -1
349-492 144 -1
1388-1510 123 -1
1083-1196 114 1
1450-1563 114 -1
1891-1995 105 1
545-649 105 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313143 0.0 2 1053.1 0.8373183 177-1962 1786 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)