Contig : dd_Smed_v6_250_0_1 S. mediterranea

Id  dd_Smed_v6_250_0_1 Length  1999    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000909.2 Homo sapiens prolyl 4-hydroxylase, beta polypeptide 3.0E-177 172-1533 1362 1
NP_524079.1 Drosophila melanogaster Protein disulfide isomerase 2.0E-175 124-1533 1410 1
NP_035162.1 Mus musculus prolyl 4-hydroxylase, beta polypeptide 3.0E-171 181-1533 1353 1

23 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 3.2E-4 841-1146 306 1
SSF52833 SSF IPR012336 Thioredoxin-like 1.91E-20 535-846 312 1
PF00085 PFAM IPR013766 Thioredoxin 8.0E-28 1222-1527 306 1
PF00085 PFAM IPR013766 Thioredoxin 2.8E-34 199-504 306 1
SSF52833 SSF IPR012336 Thioredoxin-like 6.56E-32 1192-1527 336 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 3.9E-46 187-519 333 1
TIGR01130 TIGRFAMs IPR005792 ER_PDI_fam: protein disulfide isomerase 1.1E-161 196-1614 1419 1
PS51352 PROFILE IPR012336 Thioredoxin domain profile. 15.659 1111-1536 426 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 2.8E-36 1207-1536 330 1
PR00421 PRINTS Thioredoxin family signature 5.0E-8 406-438 33 1
PR00421 PRINTS Thioredoxin family signature 5.0E-8 277-303 27 1
PS00194 PROSITE IPR017937 Thioredoxin family active site. 0.0 1282-1335 54 1
PS00194 PROSITE IPR017937 Thioredoxin family active site. 0.0 256-309 54 1
SSF52833 SSF IPR012336 Thioredoxin-like 1.8E-21 814-1209 396 1
SSF52833 SSF IPR012336 Thioredoxin-like 3.57E-39 187-519 333 1
PTHR18929:SF48 PANTHER PROTEIN DISULFIDE-ISOMERASE 9.9E-225 124-1629 1506 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 5.1E-25 523-837 315 1
PF13848 PFAM Thioredoxin-like domain 8.3E-38 595-1146 552 1
PS51352 PROFILE IPR012336 Thioredoxin domain profile. 16.42 175-513 339 1
TIGR01126 TIGRFAMs IPR005788 pdi_dom: protein disulfide-isomerase domain 4.6E-34 1231-1527 297 1
PTHR18929 PANTHER PROTEIN DISULFIDE ISOMERASE 9.9E-225 124-1629 1506 1
TIGR01126 TIGRFAMs IPR005788 pdi_dom: protein disulfide-isomerase domain 4.9E-39 208-507 300 1
PR00421 PRINTS Thioredoxin family signature 5.0E-8 253-276 24 1

4 ORFs

Contig Location Length Strand Sequence
124-1632 1509 1
1295-1636 342 1
656-889 234 1
681-791 111 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106381 9.2E-283 1 940.3 0.7223612 189-1632 1444 1
TF106379 1.0E-82 1 277.9 0.6098049 189-1407 1219 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)