Transcript : dd_Smed_v6_249_0_1 S. mediterranea

Length  3094     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067293.1, clone H.78.7a unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001246049.1 Drosophila melanogaster Myosin heavy chain 2.0E-104 488-2863 2376 1
XP_003747528.1 Metaseiulus occidentalis myosin heavy chain, muscle-like 4.0E-106 326-2815 2490 1
XP_001952092.2 Acyrthosiphon pisum myosin heavy chain 1 1.0E-105 326-2788 2463 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR13140 PANTHER MYOSIN 1.0E-167 323-2803 2481 1
SSF90257 SSF Myosin rod fragments 7.59E-9 1304-1636 333 1
PTHR13140:SF364 PANTHER MYOSIN HEAVY CHAIN, ISOFORM O-RELATED 1.0E-167 323-2803 2481 1
SSF90257 SSF Myosin rod fragments 2.43E-20 698-1045 348 1
SSF57997 SSF Tropomyosin 5.36E-7 2021-2329 309 1
PF01576 PFAM IPR002928 Myosin tail 2.2E-253 323-2761 2439 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

11 ORFs

Contig Location Length Strand Sequence
248-2863 2616 1
1461-1751 291 -1
1-192 192 1
107-274 168 -1
1929-2060 132 1
2965-3093 129 -1
435-548 114 1
954-1064 111 1
2993-3094 102 1
2645-2746 102 -1
2632-2733 102 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF336753 4.5E-293 2 974.8 0.8060763 324-2817 2494 1
TF326096 1.8E-5 2 21.7 0.72656757 330-2577 2248 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)