Contig : dd_Smed_v6_249_0_1 S. mediterranea

Id  dd_Smed_v6_249_0_1 Length  3094    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001246049.1 Drosophila melanogaster Myosin heavy chain 2.0E-104 488-2863 2376 1
XP_003747528.1 Metaseiulus occidentalis myosin heavy chain, muscle-like 4.0E-106 326-2815 2490 1
XP_001952092.2 Acyrthosiphon pisum myosin heavy chain 1 1.0E-105 326-2788 2463 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR13140 PANTHER MYOSIN 1.0E-167 323-2803 2481 1
SSF90257 SSF Myosin rod fragments 7.59E-9 1304-1636 333 1
PTHR13140:SF364 PANTHER MYOSIN HEAVY CHAIN, ISOFORM O-RELATED 1.0E-167 323-2803 2481 1
SSF90257 SSF Myosin rod fragments 2.43E-20 698-1045 348 1
SSF57997 SSF Tropomyosin 5.36E-7 2021-2329 309 1
PF01576 PFAM IPR002928 Myosin tail 2.2E-253 323-2761 2439 1

11 ORFs

Contig Location Length Strand Sequence
248-2863 2616 1
1461-1751 291 -1
1-192 192 1
107-274 168 -1
1929-2060 132 1
2965-3093 129 -1
435-548 114 1
954-1064 111 1
2993-3094 102 1
2645-2746 102 -1
2632-2733 102 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF336753 4.5E-293 2 974.8 0.8060763 324-2817 2494 1
TF326096 1.8E-5 2 21.7 0.72656757 330-2577 2248 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)