Transcript : dd_Smed_v6_2487_0_1 S. mediterranea

Length  989     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005731.1 Homo sapiens dynein, axonemal, light chain 4 6.0E-44 154-426 273 1
NP_059498.2 Mus musculus dynein, axonemal, light chain 4 7.0E-44 154-426 273 1
NP_610734.1 Drosophila melanogaster CG8407 gene product from transcript CG8407-RB 9.0E-38 157-426 270 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 1.8E-44 145-423 279 1
PF01221 PFAM IPR001372 Dynein light chain type 1 5.4E-29 160-423 264 1
SSF54648 SSF DLC 6.28E-28 148-420 273 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 2.4E-28 166-420 255 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
115-426 312 1
168-326 159 -1
68-172 105 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)