Contig : dd_Smed_v6_2487_0_1 S. mediterranea

Id  dd_Smed_v6_2487_0_1 Length  989    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005731.1 Homo sapiens dynein, axonemal, light chain 4 6.0E-44 154-426 273 1
NP_059498.2 Mus musculus dynein, axonemal, light chain 4 7.0E-44 154-426 273 1
NP_610734.1 Drosophila melanogaster CG8407 gene product from transcript CG8407-RB 9.0E-38 157-426 270 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 1.8E-44 145-423 279 1
PF01221 PFAM IPR001372 Dynein light chain type 1 5.4E-29 160-423 264 1
SSF54648 SSF DLC 6.28E-28 148-420 273 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 2.4E-28 166-420 255 1

3 ORFs

Contig Location Length Strand Sequence
115-426 312 1
168-326 159 -1
68-172 105 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)