Contig : dd_Smed_v6_2470_0_2 S. mediterranea

Id  dd_Smed_v6_2470_0_2 Length  4850    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_064659.2 Mus musculus calcium channel, voltage-dependent, alpha 2/delta subunit 2 8.0E-76 2950-4599 1650 -1
NP_001278030.1 Homo sapiens calcium channel, voltage-dependent, alpha 2/delta subunit 2 2.0E-75 2950-4599 1650 -1
XP_005100566.1 Aplysia californica voltage-dependent calcium channel subunit alpha-2/delta-2-like 3.0E-102 2875-4605 1731 -1

27 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00013 PFAM IPR004088 KH domain 8.8E-11 133-273 141 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 5.52E-11 364-609 246 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 12.286 121-306 186 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 14.865 952-1143 192 1
G3DSA:3.30.1370.10 GENE3D IPR004088   8.8E-19 121-333 213 1
G3DSA:3.30.1370.10 GENE3D IPR004088   8.9E-16 385-621 237 1
PTHR10288 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 5.6E-67 118-1146 1029 1
PS50084 PROFILE IPR004088 Type-1 KH domain profile. 10.903 391-588 198 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 1.07E-12 934-1152 219 1
PF13014 PFAM IPR004088 KH domain 4.5E-7 424-543 120 1
SM00322 SMART IPR004087 K homology RNA-binding domain 9.3E-7 949-1158 210 1
G3DSA:3.30.1370.10 GENE3D IPR004088   7.9E-14 961-1149 189 1
SM00322 SMART IPR004087 K homology RNA-binding domain 2.7E-8 388-603 216 1
PF00013 PFAM IPR004088 KH domain 7.3E-13 964-1134 171 1
SM00322 SMART IPR004087 K homology RNA-binding domain 1.6E-6 118-321 204 1
PTHR10288:SF102 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN K 5.6E-67 118-1146 1029 1
SSF54791 SSF IPR004088 Eukaryotic type KH-domain (KH-domain type I) 1.61E-12 130-333 204 1
SSF53300 SSF IPR002035 vWA-like 1.67E-19 3549-4133 585 -1
SM00327 SMART IPR002035 von Willebrand factor (vWF) type A domain 2.2E-9 3555-4133 579 -1
PTHR10166 PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/ 1.9E-122 1365-4808 3444 -1
PF13519 PFAM von Willebrand factor type A domain 3.3E-10 3636-4127 492 -1
G3DSA:3.40.50.410 GENE3D IPR002035   4.0E-12 3642-4124 483 -1
PF02743 PFAM IPR004010 Cache domain 5.5E-15 3219-3413 195 -1
PF08399 PFAM IPR013608 VWA N-terminal 3.1E-18 4203-4514 312 -1
G3DSA:3.30.450.20 GENE3D   2.8E-6 4128-4283 156 -1
G3DSA:3.30.450.20 GENE3D   1.4E-12 2979-3401 423 -1
PS50234 PROFILE IPR002035 VWFA domain profile. 16.135 3528-4127 600 -1

15 ORFs

Contig Location Length Strand Sequence
1264-4806 3543 -1
121-1185 1065 1
3-296 294 -1
1836-2069 234 -1
864-1055 192 -1
3065-3241 177 1
587-745 159 1
2327-2467 141 1
2339-2479 141 -1
2925-3053 129 -1
3229-3345 117 1
2561-2671 111 1
2786-2893 108 1
2137-2241 105 1
3549-3650 102 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)