Transcript : dd_Smed_v6_241_0_1 S. mediterranea

Length  1722     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY066687.1, clone H.7.7f unknown mRNA sequence
AY068257.1, clone H.8.10c unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524597.1 Drosophila melanogaster Saposin-related 2.0E-10 27-1085 1059 1
XP_786400.3 Strongylocentrotus purpuratus proactivator polypeptide-like 3.0E-36 33-1490 1458 1
XP_966852.1 Tribolium castaneum prosaposin 1.0E-25 9-1487 1479 1

30 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.225.10 GENE3D IPR011001 NK-Lysin 1.1E-10 834-1067 234 1
SM00741 SMART IPR008139 Saposin (B) Domains 1.2E-8 303-527 225 1
SM00741 SMART IPR008139 Saposin (B) Domains 9.3E-6 840-1061 222 1
SM00741 SMART IPR008139 Saposin (B) Domains 2.5E-14 27-251 225 1
SM00741 SMART IPR008139 Saposin (B) Domains 1.6E-11 552-776 225 1
SSF47862 SSF IPR011001 Saposin 1.57E-13 672-944 273 1
PF05184 PFAM IPR007856 Saposin-like type B, region 1 1.0E-6 843-950 108 1
PF05184 PFAM IPR007856 Saposin-like type B, region 1 9.7E-5 300-407 108 1
PS50015 PROFILE IPR008139 Saposin B type domain profile. 13.792 297-539 243 1
PS50015 PROFILE IPR008139 Saposin B type domain profile. 14.291 21-263 243 1
PTHR11480 PANTHER SAPOSIN-RELATED 4.8E-36 15-1499 1485 1
PS50015 PROFILE IPR008139 Saposin B type domain profile. 14.166 546-788 243 1
SM00162 SMART IPR003119 Saposin/surfactant protein-B A-type DOMAIN 2.1E-7 1383-1487 105 1
G3DSA:1.10.225.10 GENE3D IPR011001 NK-Lysin 1.8E-13 303-530 228 1
G3DSA:1.10.225.10 GENE3D IPR011001 NK-Lysin 2.1E-14 27-254 228 1
SSF47862 SSF IPR011001 Saposin 7.85E-13 432-662 231 1
SSF47862 SSF IPR011001 Saposin 4.6E-15 147-392 246 1
PR01797 PRINTS IPR008373 Saposin signature 5.6E-10 1128-1193 66 1
PR01797 PRINTS IPR008373 Saposin signature 5.6E-10 222-275 54 1
PR01797 PRINTS IPR008373 Saposin signature 5.6E-10 1377-1439 63 1
PR01797 PRINTS IPR008373 Saposin signature 5.6E-10 846-905 60 1
G3DSA:1.10.225.10 GENE3D IPR011001 NK-Lysin 3.6E-14 549-776 228 1
PS50015 PROFILE IPR008139 Saposin B type domain profile. 10.391 834-1073 240 1
PTHR11480:SF3 PANTHER NK LYSIN-LIKE PROTEIN 4.8E-36 15-1499 1485 1
PF02199 PFAM IPR003119 Saposin A-type domain 1.4E-11 1383-1487 105 1
SSF47862 SSF IPR011001 Saposin 1.02E-6 963-1199 237 1
PS51110 PROFILE IPR003119 Saposin A-type domain profile. 11.558 1374-1499 126 1
PF03489 PFAM IPR008138 Saposin-like type B, region 2 1.2E-5 432-527 96 1
PF03489 PFAM IPR008138 Saposin-like type B, region 2 2.2E-6 675-776 102 1
PF03489 PFAM IPR008138 Saposin-like type B, region 2 1.2E-6 150-251 102 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

6 ORFs

Contig Location Length Strand Sequence
3-1505 1503 1
2-202 201 -1
707-904 198 -1
412-603 192 -1
1368-1541 174 -1
210-323 114 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)