Transcript : dd_Smed_v6_237_0_1 S. mediterranea

Length  509     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967645.1, clone NBE.6.03G mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_524709.1 Drosophila melanogaster Ribosomal protein S15Aa 5.0E-69 73-462 390 1
NP_001010.2 Homo sapiens ribosomal protein S15a 1.0E-67 73-462 390 1
XP_004964986.1 Setaria italica 40S ribosomal protein S15a-1-like 8.0E-71 73-462 390 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00410 PFAM IPR000630 Ribosomal protein S8 2.5E-26 88-459 372 1
G3DSA:3.30.1370.30 GENE3D   2.8E-35 73-276 204 1
SSF56047 SSF IPR000630 Ribosomal protein S8 1.31E-41 79-459 381 1
G3DSA:3.30.1490.10 GENE3D   9.8E-29 280-453 174 1
PTHR11758 PANTHER IPR000630 30S RIBOSOMAL PROTEIN S8 1.2E-88 76-459 384 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
1-462 462 1
404-508 105 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300067 2.0E-79 1 264.8 0.74459726 84-462 379 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)