Transcript : dd_Smed_v6_236_0_1 S. mediterranea

Length  475     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000990.1 Homo sapiens ribosomal protein L38 1.0E-31 93-302 210 1
NP_075861.1 Mus musculus ribosomal protein L38 5.0E-31 93-302 210 1
NP_001036440.1 Drosophila melanogaster Ribosomal protein L38 1.0E-26 93-302 210 1

2 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01781 PFAM IPR002675 Ribosomal L38e protein family 2.2E-33 96-296 201 1
PTHR10965 PANTHER IPR002675 60S RIBOSOMAL PROTEIN L38 8.8E-51 93-299 207 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
93-302 210 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300215 3.0E-34 3 115.4 0.43157893 96-300 205 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)