Contig : dd_Smed_v6_236_0_1 S. mediterranea

Id  dd_Smed_v6_236_0_1 Length  475    Open in Genome Browser

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Planmine Rnai Result Displayer

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Homologue Displayer

Organism Field Displayer


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3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000990.1 Homo sapiens ribosomal protein L38 1.0E-31 93-302 210 1
NP_075861.1 Mus musculus ribosomal protein L38 5.0E-31 93-302 210 1
NP_001036440.1 Drosophila melanogaster Ribosomal protein L38 1.0E-26 93-302 210 1

2 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01781 PFAM IPR002675 Ribosomal L38e protein family 2.2E-33 96-296 201 1
PTHR10965 PANTHER IPR002675 60S RIBOSOMAL PROTEIN L38 8.8E-51 93-299 207 1

1 ORFs

Contig Location Length Strand Sequence
93-302 210 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300215 3.0E-34 3 115.4 0.43157893 96-300 205 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)