Transcript : dd_Smed_v6_235_0_1 S. mediterranea

Length  568     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967661.1, clone NBE.6.11G mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000978.1 Homo sapiens ribosomal protein L26 1.0E-47 105-521 417 1
NP_649070.1 Drosophila melanogaster Ribosomal protein L26 2.0E-46 105-527 423 1
XP_003970554.1 Takifugu rubripes 60S ribosomal protein L26-like 5.0E-50 105-521 417 1

4 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.30.30.30 GENE3D IPR014722   2.5E-37 126-479 354 1
TIGR01080 TIGRFAMs IPR005756 rplX_A_E: ribosomal protein L24 2.1E-43 129-470 342 1
PTHR11143 PANTHER IPR005756 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 2.6E-86 108-518 411 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 3.69E-31 126-479 354 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
105-527 423 1
232-429 198 1
438-566 129 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300236 5.2E-79 3 264.4 0.7306338 105-519 415 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)