Contig : dd_Smed_v6_235_0_1 S. mediterranea

Id  dd_Smed_v6_235_0_1 Length  568    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000978.1 Homo sapiens ribosomal protein L26 1.0E-47 105-521 417 1
NP_649070.1 Drosophila melanogaster Ribosomal protein L26 2.0E-46 105-527 423 1
XP_003970554.1 Takifugu rubripes 60S ribosomal protein L26-like 5.0E-50 105-521 417 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.30.30.30 GENE3D IPR014722   2.5E-37 126-479 354 1
TIGR01080 TIGRFAMs IPR005756 rplX_A_E: ribosomal protein L24 2.1E-43 129-470 342 1
PTHR11143 PANTHER IPR005756 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 2.6E-86 108-518 411 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 3.69E-31 126-479 354 1

3 ORFs

Contig Location Length Strand Sequence
105-527 423 1
232-429 198 1
438-566 129 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300236 5.2E-79 3 264.4 0.7306338 105-519 415 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)