Contig : dd_Smed_v6_2337_0_1 S. mediterranea

Id  dd_Smed_v6_2337_0_1 Length  5944    Open in Genome Browser

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Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_723044.1 Drosophila melanogaster Collagen type IV 3.0E-67 519-3878 3360 1
NP_031763.2 Mus musculus collagen, type V, alpha 2 8.0E-33 1092-3560 2469 1
NP_000384.2 Homo sapiens collagen, type V, alpha 2 4.0E-32 540-3113 2574 1

29 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF118359 SSF IPR026939 Expressed protein At2g23090/F21P24.15 8.24E-5 5146-5241 96 1
PS51403 PROFILE IPR001442 Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile. 48.503 4848-5525 678 1
PF01413 PFAM IPR001442 C-terminal tandem repeated domain in type 4 procollagen 1.8E-23 4854-5171 318 1
PF01413 PFAM IPR001442 C-terminal tandem repeated domain in type 4 procollagen 1.9E-28 5184-5519 336 1
PTHR24023 PANTHER FAMILY NOT NAMED 9.0E-250 330-5522 5193 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 6.9E-7 2850-3014 165 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 9.7E-9 396-569 174 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 1.8E-7 3474-3626 153 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 7.4E-6 1353-1514 162 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 1.9E-7 3174-3335 162 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 3.9E-7 2556-2729 174 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 2.0E-7 1146-1310 165 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 2.7E-6 3756-3911 156 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 6.5E-7 549-707 159 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 4.3E-6 3573-3737 165 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 1.5E-7 3894-4058 165 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 8.0E-7 2430-2597 168 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 1.2E-7 459-614 156 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 2.3E-6 2202-2363 162 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 1.2E-8 744-899 156 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 6.7E-8 2094-2246 153 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 1.2E-8 3033-3191 159 1
PF01391 PFAM IPR008160 Collagen triple helix repeat (20 copies) 3.0E-9 1011-1181 171 1
SSF56436 SSF IPR016187 C-type lectin-like 3.77E-26 5181-5522 342 1
G3DSA:2.170.240.10 GENE3D IPR001442 Noncollagenous (NC1) domain of collagen IV 2.2E-70 4845-5522 678 1
SM00111 SMART IPR001442 C-terminal tandem repeated domain in type 4 procollagens 2.5E-27 5178-5522 345 1
SM00111 SMART IPR001442 C-terminal tandem repeated domain in type 4 procollagens 6.7E-27 4851-5174 324 1
PTHR24023:SF354 PANTHER SUBFAMILY NOT NAMED 9.0E-250 330-5522 5193 1
SSF56436 SSF IPR016187 C-type lectin-like 5.42E-27 4854-5177 324 1

19 ORFs

Contig Location Length Strand Sequence
213-5528 5316 1
2300-2641 342 -1
125-409 285 -1
4529-4780 252 -1
4268-4483 216 -1
1108-1320 213 1
2830-3033 204 1
3937-4140 204 1
5711-5914 204 1
3633-3782 150 -1
2092-2232 141 1
3544-3666 123 1
655-774 120 1
4636-4755 120 1
5268-5387 120 -1
5747-5863 117 -1
4321-4434 114 1
1458-1565 108 -1
4874-4978 105 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF316865 2.7E-212 3 706.5 0.5775572 2091-5523 3433 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)