Transcript : dd_Smed_v6_2300_0_8 S. mediterranea

Length  4907     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_038482.3 Mus musculus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 1-4599 4599 1
NP_835196.1 Rattus norvegicus ATP binding cassette subfamily A member 1 0.0 1-4599 4599 1
NP_989476.1 Gallus gallus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 1-4599 4599 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF12698 PFAM ABC-2 family transporter protein 2.9E-33 2530-3435 906 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.5E-70 589-1320 732 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 17.661 3586-4344 759 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 8.75E-52 3682-4332 651 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 20.488 613-1308 696 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 6.0E-9 691-1239 549 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 7.2E-7 3724-4275 552 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.45E-56 592-1257 666 1
PF00005 PFAM IPR003439 ABC transporter 3.0E-23 3700-4128 429 1
PTHR19229 PANTHER IPR026082 ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A (ABCA 0.0 1-4593 4593 1
PS00211 PROSITE IPR017871 ABC transporters family signature. 0.0 1012-1053 42 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 4.7E-68 3562-4338 777 1
PF00005 PFAM IPR003439 ABC transporter 9.3E-28 667-1095 429 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

10 ORFs

Contig Location Length Strand Sequence
1-4707 4707 1
3327-3596 270 -1
2231-2449 219 -1
404-568 165 1
1388-1552 165 -1
697-861 165 -1
3669-3827 159 -1
4568-4696 129 1
4261-4377 117 -1
1248-1355 108 1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)