Contig : dd_Smed_v6_2300_0_6 S. mediterranea

Id  dd_Smed_v6_2300_0_6 Length  5155    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_038482.3 Mus musculus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 1-4599 4599 1
NP_835196.1 Rattus norvegicus ATP-binding cassette, subfamily A (ABC1), member 1 0.0 1-4599 4599 1
NP_989476.1 Gallus gallus ATP-binding cassette, sub-family A (ABC1), member 1 0.0 1-4599 4599 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF12698 PFAM ABC-2 family transporter protein 2.9E-33 2530-3435 906 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 1.5E-70 589-1320 732 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 17.661 3586-4344 759 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 8.75E-52 3682-4332 651 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 6.0E-9 691-1239 549 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 7.2E-7 3724-4275 552 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 3.45E-56 592-1257 666 1
PS00211 PROSITE IPR017871 ABC transporters family signature. 0.0 1012-1053 42 1
PF00005 PFAM IPR003439 ABC transporter 3.0E-23 3700-4128 429 1
PF00005 PFAM IPR003439 ABC transporter 9.3E-28 667-1095 429 1
PTHR19229 PANTHER IPR026082 ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A (ABCA 0.0 1-4593 4593 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 4.7E-68 3562-4338 777 1
PS50893 PROFILE IPR003439 ATP-binding cassette, ABC transporter-type domain profile. 20.488 613-1308 696 1

11 ORFs

Contig Location Length Strand Sequence
1-4707 4707 1
3327-3596 270 -1
2231-2449 219 -1
4988-5155 168 -1
404-568 165 1
1388-1552 165 -1
697-861 165 -1
3669-3827 159 -1
4568-4696 129 1
4261-4377 117 -1
1248-1355 108 1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)