Contig : dd_Smed_v6_228_0_1 S. mediterranea

Id  dd_Smed_v6_228_0_1 Length  748    Open in Genome Browser

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Homologue Displayer

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_476631.1 Drosophila melanogaster Ribosomal protein L19 4.0E-72 116-589 474 1
NP_000972.1 Homo sapiens ribosomal protein L19 7.0E-62 116-589 474 1
NP_001152955.1 Mus musculus ribosomal protein L19 1.0E-60 125-589 465 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10722 PANTHER 60S RIBOSOMAL PROTEIN L19 4.6E-120 116-697 582 1
G3DSA:1.10.1650.10 GENE3D IPR015972   2.1E-32 116-280 165 1
PF01280 PFAM IPR000196 Ribosomal protein L19e 4.9E-61 122-553 432 1
G3DSA:1.10.1200.60 GENE3D IPR015974   1.2E-26 386-556 171 1
SSF48140 SSF IPR000196 Ribosomal protein L19 (L19e) 8.89E-63 122-541 420 1
PS00526 PROSITE IPR023638 Ribosomal protein L19e signature. 0.0 134-190 57 1

4 ORFs

Contig Location Length Strand Sequence
116-700 585 1
544-747 204 -1
572-748 177 -1
232-342 111 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313598 3.4E-96 2 321.1 0.7593583 135-702 568 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)