Transcript : dd_Smed_v6_228_0_1 S. mediterranea

Length  748     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_476631.1 Drosophila melanogaster Ribosomal protein L19 4.0E-72 116-589 474 1
NP_000972.1 Homo sapiens ribosomal protein L19 7.0E-62 116-589 474 1
NP_001152955.1 Mus musculus ribosomal protein L19 1.0E-60 125-589 465 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10722 PANTHER 60S RIBOSOMAL PROTEIN L19 4.6E-120 116-697 582 1
G3DSA:1.10.1650.10 GENE3D IPR015972   2.1E-32 116-280 165 1
PF01280 PFAM IPR000196 Ribosomal protein L19e 4.9E-61 122-553 432 1
G3DSA:1.10.1200.60 GENE3D IPR015974   1.2E-26 386-556 171 1
SSF48140 SSF IPR000196 Ribosomal protein L19 (L19e) 8.89E-63 122-541 420 1
PS00526 PROSITE IPR023638 Ribosomal protein L19e signature. 0.0 134-190 57 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
116-700 585 1
544-747 204 -1
572-748 177 -1
232-342 111 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF313598 3.4E-96 2 321.1 0.7593583 135-702 568 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)