Transcript : dd_Smed_v6_227_0_1 S. mediterranea [Putative Chimera]

Length  2590     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001006.1 Homo sapiens ribosomal protein S11 5.0E-52 79-462 384 1
NP_725115.1 Drosophila melanogaster Ribosomal protein S11 3.0E-48 76-462 387 1
NP_001080676.1 Xenopus laevis ribosomal protein S11 3.0E-54 79-462 384 1

11 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00973 PRINTS IPR000266 Ribosomal protein S17 family signature 1.55E-11 430-450 21 1
PF00366 PFAM IPR000266 Ribosomal protein S17 1.2E-25 256-462 207 1
SSF50249 SSF IPR012340 Nucleic acid-binding proteins 2.53E-24 238-477 240 1
PTHR10744 PANTHER IPR000266 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 2.3E-73 73-486 414 1
G3DSA:2.40.50.140 GENE3D IPR012340 Nucleic acid-binding proteins 5.1E-32 235-486 252 1
PR00973 PRINTS IPR000266 Ribosomal protein S17 family signature 1.55E-11 400-429 30 1
PR00973 PRINTS IPR000266 Ribosomal protein S17 family signature 1.55E-11 298-366 69 1
SSF47473 SSF EF-hand 1.69E-11 1730-1960 231 -1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 3.3E-9 1325-1540 216 -1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 3.3E-9 1772-1936 165 -1
SSF47473 SSF EF-hand 1.69E-11 1331-1513 183 -1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
625-2367 1743 -1
1-504 504 1
64-369 306 -1
1605-1733 129 -1
1065-1187 123 -1
2172-2291 120 -1
2215-2328 114 1
113-217 105 -1

0 Treefam Sequence Features

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)