Contig : dd_Smed_v6_224_0_1 S. mediterranea

Id  dd_Smed_v6_224_0_1 Length  418    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_476630.1 Drosophila melanogaster Ribosomal protein LP1 2.0E-10 47-241 195 1
NP_000994.1 Homo sapiens ribosomal protein, large, P1 1.0E-8 47-235 189 1
NP_061341.1 Mus musculus ribosomal protein, large, P1 2.0E-8 47-235 189 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21141:SF36 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 4.7E-28 47-370 324 1
PTHR21141 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 4.7E-28 47-370 324 1
PF00428 PFAM IPR001813 60s Acidic ribosomal protein 3.7E-13 113-367 255 1

4 ORFs

Contig Location Length Strand Sequence
47-373 327 1
22-234 213 -1
153-269 117 -1
309-416 108 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF312932 3.1E-33 2 114.7 0.73444974 66-372 307 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)