Transcript : dd_Smed_v6_224_0_1 S. mediterranea

Length  418     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_476630.1 Drosophila melanogaster Ribosomal protein LP1 2.0E-10 47-241 195 1
NP_000994.1 Homo sapiens ribosomal protein lateral stalk subunit P1 1.0E-8 47-235 189 1
NP_061341.1 Mus musculus ribosomal protein, large, P1 2.0E-8 47-235 189 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR21141:SF36 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 4.7E-28 47-370 324 1
PTHR21141 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 4.7E-28 47-370 324 1
PF00428 PFAM IPR001813 60s Acidic ribosomal protein 3.7E-13 113-367 255 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
47-373 327 1
22-234 213 -1
153-269 117 -1
309-416 108 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF312932 3.1E-33 2 114.7 0.73444974 66-372 307 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)