Transcript : dd_Smed_v6_222_0_1 S. mediterranea

Length  733     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523595.1 Drosophila melanogaster Ribosomal protein S26 3.0E-19 155-403 249 1
XP_002640699.1 Caenorhabditis briggsae C. briggsae CBR-RPS-26 protein 1.0E-23 155-406 252 1
XP_003107513.1 Caenorhabditis remanei CRE-RPS-26 protein 1.0E-23 155-433 279 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01283 PFAM IPR000892 Ribosomal protein S26e 6.4E-50 104-424 321 1
PTHR12538 PANTHER IPR000892 40S RIBOSOMAL PROTEIN S26 1.5E-71 107-403 297 1
PS00733 PROSITE IPR000892 Ribosomal protein S26e signature. 0.0 320-340 21 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
104-460 357 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300234 2.2E-63 2 213.2 0.43519783 114-432 319 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)