Contig : dd_Smed_v6_222_0_1 S. mediterranea

Id  dd_Smed_v6_222_0_1 Length  733    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer


GO Displayer


3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523595.1 Drosophila melanogaster Ribosomal protein S26 3.0E-19 155-403 249 1
XP_002640699.1 Caenorhabditis briggsae C. briggsae CBR-RPS-26 protein 1.0E-23 155-406 252 1
XP_003107513.1 Caenorhabditis remanei CRE-RPS-26 protein 1.0E-23 155-433 279 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01283 PFAM IPR000892 Ribosomal protein S26e 6.4E-50 104-424 321 1
PTHR12538 PANTHER IPR000892 40S RIBOSOMAL PROTEIN S26 1.5E-71 107-403 297 1
PS00733 PROSITE IPR000892 Ribosomal protein S26e signature. 0.0 320-340 21 1

1 ORFs

Contig Location Length Strand Sequence
104-460 357 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300234 2.2E-63 2 213.2 0.43519783 114-432 319 1


0 Publications

To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)