Contig : dd_Smed_v6_222_0_1 S. mediterranea

Id  dd_Smed_v6_222_0_1 Length  733    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523595.1 Drosophila melanogaster Ribosomal protein S26 3.0E-19 155-403 249 1
XP_002640699.1 Caenorhabditis briggsae C. briggsae CBR-RPS-26 protein 1.0E-23 155-406 252 1
XP_003107513.1 Caenorhabditis remanei CRE-RPS-26 protein 1.0E-23 155-433 279 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF01283 PFAM IPR000892 Ribosomal protein S26e 6.4E-50 104-424 321 1
PTHR12538 PANTHER IPR000892 40S RIBOSOMAL PROTEIN S26 1.5E-71 107-403 297 1
PS00733 PROSITE IPR000892 Ribosomal protein S26e signature. 0.0 320-340 21 1

1 ORFs

Contig Location Length Strand Sequence
104-460 357 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300234 2.2E-63 2 213.2 0.43519783 114-432 319 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)