Contig : dd_Smed_v6_2221_0_1 S. mediterranea

Id  dd_Smed_v6_2221_0_1 Length  2309    Open in Genome Browser

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006588.1 Homo sapiens heat shock 70kDa protein 8 0.0 142-1965 1824 1
NP_077327.1 Rattus norvegicus heat shock 70kDa protein 8 0.0 142-1965 1824 1
NP_776770.2 Bos taurus heat shock 70kDa protein 8 0.0 142-1965 1824 1

30 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF53067 SSF Actin-like ATPase domain 3.5E-70 703-1275 573 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 229-264 36 1
PS01036 PROSITE IPR018181 Heat shock hsp70 proteins family signature 3. 0.0 1132-1173 42 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 295-318 24 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 1123-1170 48 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 739-768 30 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 1219-1278 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 1300-1356 57 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 1543-1590 48 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 556-615 60 1
PR00301 PRINTS IPR013126 70kDa heat shock protein signature 1.0E-87 145-183 39 1
PTHR19375:SF142 PANTHER HEAT SHOCK 70 KDA PROTEIN COGNATE 1-RELATED 0.0 124-2055 1932 1
G3DSA:3.30.420.40 GENE3D   1.1E-39 1078-1206 129 1
G3DSA:3.30.420.40 GENE3D   1.1E-39 736-819 84 1
G3DSA:3.30.30.30 GENE3D   7.3E-36 295-474 180 1
SSF100920 SSF IPR029047 Heat shock protein 70kD (HSP70), peptide-binding domain 3.14E-64 1294-1758 465 1
G3DSA:3.90.640.10 GENE3D Actin; Chain A, domain 4 5.4E-40 823-1062 240 1
PS00329 PROSITE IPR018181 Heat shock hsp70 proteins family signature 2. 0.0 721-759 39 1
PTHR19375 PANTHER HEAT SHOCK PROTEIN 70KDA 0.0 124-2055 1932 1
G3DSA:2.60.34.10 GENE3D IPR029047 Substrate Binding Domain Of DNAk; Chain A, domain 1 9.9E-69 1306-1683 378 1
PF00012 PFAM IPR013126 Hsp70 protein 5.4E-271 148-1962 1815 1
PS00297 PROSITE IPR018181 Heat shock hsp70 proteins family signature 1. 0.0 157-177 21 1
G3DSA:1.20.1270.10 GENE3D IPR029048   1.6E-39 1687-1989 303 1
G3DSA:3.30.420.40 GENE3D   1.6E-69 499-732 234 1
SSF53067 SSF Actin-like ATPase domain 3.02E-70 145-690 546 1
SSF100934 SSF IPR029048 Heat shock protein 70kD (HSP70), C-terminal subdomain 7.06E-27 1744-1983 240 1
G3DSA:3.30.420.40 GENE3D   1.6E-69 145-291 147 1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 8.6E-10 1527-1652 126 -1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 2.1E-6 804-950 147 -1
PF10712 PFAM IPR019651 NAD-specific glutamate dehydrogenase 2.0E-21 501-749 249 -1

5 ORFs

Contig Location Length Strand Sequence
136-2058 1923 1
749-889 141 1
1964-2098 135 1
1646-1756 111 -1
299-406 108 -1

7 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105045 7.5E-197 1 655.7 0.6487657 144-1641 1498 1
TF354208 0.0 1 1384.7 0.8280641 147-2058 1912 1
TF105046 3.6E-273 1 908.0 0.75530535 147-1890 1744 1
TF105044 0.0 1 1195.5 0.79298395 153-1983 1831 1
TF105047 9.8E-141 1 469.5 0.48765698 153-1278 1126 1
TF105043 2.9E-109 1 365.2 0.48635772 153-1275 1123 1
TF105048 2.0E-87 1 293.0 0.4590732 216-1275 1060 1
 

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To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)