Transcript : dd_Smed_v6_220_0_4 S. mediterranea

Length  1474     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_031617.1 Mus musculus calreticulin 2.0E-147 159-1196 1038 1
NP_004334.1 Homo sapiens calreticulin 1.0E-146 159-1196 1038 1
NP_524293.2 Drosophila melanogaster Calreticulin 7.0E-146 126-1202 1077 1

14 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00804 PROSITE IPR018124 Calreticulin family signature 2. 0.0 498-521 24 1
SSF49899 SSF IPR008985 Concanavalin A-like lectins/glucanases 2.06E-59 168-758 591 1
G3DSA:2.60.120.200 GENE3D IPR013320   5.6E-8 807-878 72 1
PTHR11073 PANTHER IPR001580 CALRETICULIN AND CALNEXIN 9.1E-223 120-1316 1197 1
SSF63887 SSF IPR009033 P-domain of calnexin/calreticulin 1.44E-42 711-1052 342 1
PF00262 PFAM IPR001580 Calreticulin family 1.0E-120 171-1103 933 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 834-899 66 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 486-533 48 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 948-1004 57 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 753-791 39 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 1047-1106 60 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 408-461 54 1
PS00803 PROSITE IPR018124 Calreticulin family signature 1. 0.0 402-446 45 1
G3DSA:2.60.120.200 GENE3D IPR013320   2.2E-91 153-803 651 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
114-1337 1224 1
633-983 351 -1
626-835 210 -1
178-381 204 1
871-1071 201 1
364-492 129 -1
673-792 120 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF338438 2.3E-222 3 739.5 0.75373137 204-1314 1111 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)