Contig : dd_Smed_v6_220_0_4 S. mediterranea

Id  dd_Smed_v6_220_0_4 Length  1474    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_031617.1 Mus musculus calreticulin 2.0E-147 159-1196 1038 1
NP_004334.1 Homo sapiens calreticulin 1.0E-146 159-1196 1038 1
NP_524293.2 Drosophila melanogaster Calreticulin 7.0E-146 126-1202 1077 1

14 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00804 PROSITE IPR018124 Calreticulin family signature 2. 0.0 498-521 24 1
SSF49899 SSF IPR008985 Concanavalin A-like lectins/glucanases 2.06E-59 168-758 591 1
G3DSA:2.60.120.200 GENE3D IPR013320   5.6E-8 807-878 72 1
PTHR11073 PANTHER IPR001580 CALRETICULIN AND CALNEXIN 9.1E-223 120-1316 1197 1
SSF63887 SSF IPR009033 P-domain of calnexin/calreticulin 1.44E-42 711-1052 342 1
PF00262 PFAM IPR001580 Calreticulin family 1.0E-120 171-1103 933 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 834-899 66 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 486-533 48 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 948-1004 57 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 753-791 39 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 1047-1106 60 1
PR00626 PRINTS IPR001580 Calreticulin signature 1.14E-52 408-461 54 1
PS00803 PROSITE IPR018124 Calreticulin family signature 1. 0.0 402-446 45 1
G3DSA:2.60.120.200 GENE3D IPR013320   2.2E-91 153-803 651 1

7 ORFs

Contig Location Length Strand Sequence
114-1337 1224 1
633-983 351 -1
626-835 210 -1
178-381 204 1
871-1071 201 1
364-492 129 -1
673-792 120 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF338438 2.3E-222 3 739.5 0.75373137 204-1314 1111 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)