Contig : dd_Smed_v6_21682_0_1 S. mediterranea

Id  dd_Smed_v6_21682_0_1 Length  607    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006079.1 Homo sapiens tubulin, beta 4B class IVb 2.0E-144 3-605 603 1
XP_005511621.1 Columba livia tubulin beta chain-like 7.0E-147 3-605 603 1
XP_006123771.1 Pelodiscus sinensis tubulin beta-4B chain-like 8.0E-147 3-605 603 1

18 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 1.1E-27 267-605 339 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 570-605 36 1
G3DSA:3.30.1330.20 GENE3D IPR018316   2.8E-48 321-602 282 1
PR01161 PRINTS IPR000217 Tubulin signature 4.7E-15 57-95 39 1
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 5.49E-48 261-605 345 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 219-245 27 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 264-302 39 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 324-371 48 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 165-200 36 1
PR01161 PRINTS IPR000217 Tubulin signature 4.7E-15 99-158 60 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 462-515 54 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 516-557 42 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 5.7E-40 312-602 291 1
G3DSA:3.40.50.1440 GENE3D IPR003008   1.1E-59 3-317 315 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 1.7E-12 3-194 192 1
PTHR11588 PANTHER IPR000217 TUBULIN 5.6E-185 3-602 600 1
PTHR11588:SF89 PANTHER SUBFAMILY NOT NAMED 5.6E-185 3-602 600 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 7.46E-29 3-257 255 1

4 ORFs

Contig Location Length Strand Sequence
3-605 603 1
478-606 129 -1
2-121 120 1
498-605 108 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 4.4E-23 3 80.3 0.99011534 3-603 601 1
TF300477 4.0E-39 3 133.0 0.9357496 6-573 568 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)