Transcript : dd_Smed_v6_21682_0_1 S. mediterranea

Length  607     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006079.1 Homo sapiens tubulin beta 4B class IVb 2.0E-144 3-605 603 1
XP_005511621.1 Columba livia tubulin beta chain 7.0E-147 3-605 603 1
XP_006123771.1 Pelodiscus sinensis tubulin beta chain 8.0E-147 3-605 603 1

18 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SM00865 SMART IPR018316 Tubulin/FtsZ family, C-terminal domain 1.1E-27 267-605 339 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 570-605 36 1
G3DSA:3.30.1330.20 GENE3D IPR018316   2.8E-48 321-602 282 1
PR01161 PRINTS IPR000217 Tubulin signature 4.7E-15 57-95 39 1
SSF55307 SSF IPR008280 Tubulin C-terminal domain-like 5.49E-48 261-605 345 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 219-245 27 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 264-302 39 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 324-371 48 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 165-200 36 1
PR01161 PRINTS IPR000217 Tubulin signature 4.7E-15 99-158 60 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 462-515 54 1
PR01163 PRINTS IPR002453 Beta-tubulin signature 1.1E-59 516-557 42 1
PF03953 PFAM IPR018316 Tubulin C-terminal domain 5.7E-40 312-602 291 1
G3DSA:3.40.50.1440 GENE3D IPR003008   1.1E-59 3-317 315 1
PF00091 PFAM IPR003008 Tubulin/FtsZ family, GTPase domain 1.7E-12 3-194 192 1
PTHR11588 PANTHER IPR000217 TUBULIN 5.6E-185 3-602 600 1
PTHR11588:SF89 PANTHER SUBFAMILY NOT NAMED 5.6E-185 3-602 600 1
SSF52490 SSF IPR003008 Tubulin nucleotide-binding domain-like 7.46E-29 3-257 255 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
3-605 603 1
478-606 129 -1
2-121 120 1
498-605 108 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF330882 4.4E-23 3 80.3 0.99011534 3-603 601 1
TF300477 4.0E-39 3 133.0 0.9357496 6-573 568 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)