Transcript : dd_Smed_v6_214_1_1 S. mediterranea

Length  640     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000396.2 Homo sapiens GM2 ganglioside activator 1.0E-15 36-539 504 1
NP_034429.1 Mus musculus GM2 ganglioside activator protein 3.0E-15 12-539 528 1
NP_001279525.1 Callorhinchus milii ganglioside GM2 activator-like 1.0E-19 42-539 498 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.70.220.10 GENE3D   1.3E-35 66-533 468 1
SSF63707 SSF Ganglioside M2 (gm2) activator 1.44E-27 66-533 468 1
PTHR17357 PANTHER IPR028996 GM2 GANGLIOSIDE ACTIVATOR PROTEIN 1.0E-23 75-536 462 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
3-542 540 1
107-388 282 -1
345-509 165 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF353575 1.3E-16 3 59.0 0.540625 144-489 346 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)