Contig : dd_Smed_v6_214_1_1 S. mediterranea

Id  dd_Smed_v6_214_1_1 Length  640    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000396.2 Homo sapiens GM2 ganglioside activator 1.0E-15 36-539 504 1
NP_034429.1 Mus musculus GM2 ganglioside activator protein 3.0E-15 12-539 528 1
NP_001279525.1 Callorhinchus milii ganglioside GM2 activator-like 1.0E-19 42-539 498 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.70.220.10 GENE3D   1.3E-35 66-533 468 1
SSF63707 SSF Ganglioside M2 (gm2) activator 1.44E-27 66-533 468 1
PTHR17357 PANTHER IPR028996 GM2 GANGLIOSIDE ACTIVATOR PROTEIN 1.0E-23 75-536 462 1

3 ORFs

Contig Location Length Strand Sequence
3-542 540 1
107-388 282 -1
345-509 165 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF353575 1.3E-16 3 59.0 0.540625 144-489 346 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)