Transcript : dd_Smed_v6_2133_0_1 S. mediterranea

Length  1319     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY967585.1, clone NBE.3.03C mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_648525.1 Drosophila melanogaster Regulatory particle triple-A ATPase 4-related 0.0 67-1248 1182 1
NP_080235.2 Mus musculus proteasome (prosome, macropain) 26S subunit, ATPase, 6 0.0 88-1248 1161 1
NP_002797.3 Homo sapiens proteasome 26S subunit, ATPase 6 0.0 88-1248 1161 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.8.60 GENE3D   4.5E-21 1015-1209 195 1
PTHR23073 PANTHER 26S PROTEASE REGULATORY SUBUNIT 2.3E-266 76-1245 1170 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 1.1E-21 577-993 417 1
PS00674 PROSITE IPR003960 AAA-protein family signature. 0.0 898-951 54 1
TIGR01242 TIGRFAMs IPR005937 26Sp45: 26S proteasome subunit P45 family 3.6E-138 133-1200 1068 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 5.91E-69 469-1215 747 1
PF00004 PFAM IPR003959 ATPase family associated with various cellular activities (AAA) 2.0E-43 592-987 396 1
PTHR23073:SF24 PANTHER 26S PROTEASE REGULATORY SUBUNIT 10B 2.3E-266 76-1245 1170 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 9.9E-61 466-1011 546 1
SSF54076 SSF IPR023412 RNase A-like 6.58E-5 750-857 108 -1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
61-1248 1188 1
1029-1184 156 -1
1184-1318 135 -1
285-386 102 -1

23 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106229 1.1E-274 1 911.9 0.8809704 87-1248 1162 1
TF105661 6.3E-119 1 397.6 0.8241092 126-1212 1087 1
TF106226 3.7E-129 1 431.8 0.80591357 138-1200 1063 1
TF106227 8.5E-90 1 301.3 0.7717968 174-1191 1018 1
TF352211 3.1E-109 1 365.4 0.76497346 210-1218 1009 1
TF105648 1.3E-104 1 350.5 0.7263078 261-1218 958 1
TF106447 4.0E-58 1 195.8 0.52843064 456-1152 697 1
TF300542 1.1E-69 1 234.8 0.56027293 468-1206 739 1
TF323170 1.3E-47 1 162.1 0.5261562 468-1161 694 1
TF314783 3.2E-53 1 180.2 0.5147839 471-1149 679 1
TF352212 1.0E-52 1 177.5 0.5147839 471-1149 679 1
TF329610 9.0E-49 1 166.3 0.51250947 474-1149 676 1
TF325792 1.6E-73 1 247.1 0.50796056 480-1149 670 1
TF314681 1.3E-65 1 220.6 0.5579985 483-1218 736 1
TF105012 2.8E-50 1 170.1 0.50341165 486-1149 664 1
TF105005 6.0E-56 1 189.4 0.46474603 510-1122 613 1
TF105014 2.3E-40 1 138.6 0.48066717 516-1149 634 1
TF105015 2.9E-33 1 114.0 0.47156936 516-1137 622 1
TF105004 5.6E-69 1 232.1 0.49658832 540-1194 655 1
TF105003 5.7E-58 1 195.4 0.5011372 543-1203 661 1
TF300371 1.0E-38 1 131.8 0.45337376 546-1143 598 1
TF354222 1.6E-55 1 186.8 0.47839272 564-1194 631 1
TF106228 5.8E-46 1 155.4 0.4374526 570-1146 577 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)