Contig : dd_Smed_v6_2133_0_1 S. mediterranea

Id  dd_Smed_v6_2133_0_1 Length  1319    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_648525.1 Drosophila melanogaster Regulatory particle triple-A ATPase 4-related 0.0 67-1248 1182 1
NP_080235.2 Mus musculus proteasome (prosome, macropain) 26S subunit, ATPase, 6 0.0 88-1248 1161 1
NP_002797.3 Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6 0.0 88-1248 1161 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:1.10.8.60 GENE3D   4.5E-21 1015-1209 195 1
PTHR23073 PANTHER 26S PROTEASE REGULATORY SUBUNIT 2.3E-266 76-1245 1170 1
SM00382 SMART IPR003593 ATPases associated with a variety of cellular activities 1.1E-21 577-993 417 1
PS00674 PROSITE IPR003960 AAA-protein family signature. 0.0 898-951 54 1
TIGR01242 TIGRFAMs IPR005937 26Sp45: 26S proteasome subunit P45 family 3.6E-138 133-1200 1068 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 5.91E-69 469-1215 747 1
PF00004 PFAM IPR003959 ATPase family associated with various cellular activities (AAA) 2.0E-43 592-987 396 1
PTHR23073:SF24 PANTHER 26S PROTEASE REGULATORY SUBUNIT 10B 2.3E-266 76-1245 1170 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 9.9E-61 466-1011 546 1
SSF54076 SSF IPR023412 RNase A-like 6.58E-5 750-857 108 -1

4 ORFs

Contig Location Length Strand Sequence
61-1248 1188 1
1029-1184 156 -1
1184-1318 135 -1
285-386 102 -1

23 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106229 1.1E-274 1 911.9 0.8809704 87-1248 1162 1
TF105661 6.3E-119 1 397.6 0.8241092 126-1212 1087 1
TF106226 3.7E-129 1 431.8 0.80591357 138-1200 1063 1
TF106227 8.5E-90 1 301.3 0.7717968 174-1191 1018 1
TF352211 3.1E-109 1 365.4 0.76497346 210-1218 1009 1
TF105648 1.3E-104 1 350.5 0.7263078 261-1218 958 1
TF106447 4.0E-58 1 195.8 0.52843064 456-1152 697 1
TF300542 1.1E-69 1 234.8 0.56027293 468-1206 739 1
TF323170 1.3E-47 1 162.1 0.5261562 468-1161 694 1
TF314783 3.2E-53 1 180.2 0.5147839 471-1149 679 1
TF352212 1.0E-52 1 177.5 0.5147839 471-1149 679 1
TF329610 9.0E-49 1 166.3 0.51250947 474-1149 676 1
TF325792 1.6E-73 1 247.1 0.50796056 480-1149 670 1
TF314681 1.3E-65 1 220.6 0.5579985 483-1218 736 1
TF105012 2.8E-50 1 170.1 0.50341165 486-1149 664 1
TF105005 6.0E-56 1 189.4 0.46474603 510-1122 613 1
TF105014 2.3E-40 1 138.6 0.48066717 516-1149 634 1
TF105015 2.9E-33 1 114.0 0.47156936 516-1137 622 1
TF105004 5.6E-69 1 232.1 0.49658832 540-1194 655 1
TF105003 5.7E-58 1 195.4 0.5011372 543-1203 661 1
TF300371 1.0E-38 1 131.8 0.45337376 546-1143 598 1
TF354222 1.6E-55 1 186.8 0.47839272 564-1194 631 1
TF106228 5.8E-46 1 155.4 0.4374526 570-1146 577 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)