Contig : dd_Smed_v6_211_0_1 S. mediterranea

Id  dd_Smed_v6_211_0_1 Length  1247    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_001894323.1 Brugia malayi 60S ribosomal protein L4 3.0E-125 112-1203 1092 1
XP_003135815.1 Loa loa 60S ribosomal protein L4 2.0E-123 112-1203 1092 1
XP_002731171.1 Saccoglossus kowalevskii 60S ribosomal protein L4-B-like 2.0E-122 106-1197 1092 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR19431 PANTHER 60S RIBOSOMAL PROTEIN L4 2.7E-205 106-1149 1044 1
PF14374 PFAM IPR025755 60S ribosomal protein L4 C-terminal domain 8.5E-24 958-1152 195 1
G3DSA:3.40.1370.10 GENE3D IPR023574   8.8E-107 190-918 729 1
PF00573 PFAM IPR002136 Ribosomal protein L4/L1 family 2.0E-40 205-915 711 1
SSF52166 SSF IPR023574 Ribosomal protein L4 4.71E-76 190-915 726 1

5 ORFs

Contig Location Length Strand Sequence
109-1206 1098 1
287-505 219 1
394-558 165 -1
734-835 102 1
741-842 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300593 1.1E-141 1 471.4 0.76343226 207-1158 952 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)