Transcript : dd_Smed_v6_211_0_1 S. mediterranea

Length  1247     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067202.1, clone H.49.1d(T3) unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_001894323.1 Brugia malayi 60S ribosomal protein L4 3.0E-125 112-1203 1092 1
XP_003135815.1 Loa loa 60S ribosomal protein L4 2.0E-123 112-1203 1092 1
XP_002731171.1 Saccoglossus kowalevskii 60S ribosomal protein L4-B-like 2.0E-122 106-1197 1092 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR19431 PANTHER 60S RIBOSOMAL PROTEIN L4 2.7E-205 106-1149 1044 1
PF14374 PFAM IPR025755 60S ribosomal protein L4 C-terminal domain 8.5E-24 958-1152 195 1
G3DSA:3.40.1370.10 GENE3D IPR023574   8.8E-107 190-918 729 1
PF00573 PFAM IPR002136 Ribosomal protein L4/L1 family 2.0E-40 205-915 711 1
SSF52166 SSF IPR023574 Ribosomal protein L4 4.71E-76 190-915 726 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

5 ORFs

Contig Location Length Strand Sequence
109-1206 1098 1
287-505 219 1
394-558 165 -1
734-835 102 1
741-842 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300593 1.1E-141 1 471.4 0.76343226 207-1158 952 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)