Contig : dd_Smed_v6_2119_0_1 S. mediterranea

Id  dd_Smed_v6_2119_0_1 Length  1049    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_035824.1 Mus musculus voltage-dependent anion channel 1 1.0E-63 18-866 849 1
NP_003365.1 Homo sapiens voltage-dependent anion channel 1 2.0E-63 18-866 849 1
XP_006267451.1 Alligator mississippiensis voltage-dependent anion channel 2 3.0E-69 18-860 843 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11743 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 7.9E-95 3-869 867 1
PR00185 PRINTS IPR001925 Eukaryotic porin signature 5.59E-13 762-812 51 1
PR00185 PRINTS IPR001925 Eukaryotic porin signature 5.59E-13 216-260 45 1
PR00185 PRINTS IPR001925 Eukaryotic porin signature 5.59E-13 462-494 33 1
PR00185 PRINTS IPR001925 Eukaryotic porin signature 5.59E-13 30-74 45 1
PF01459 PFAM IPR027246 Eukaryotic porin 3.4E-55 27-848 822 1
G3DSA:2.40.160.10 GENE3D IPR023614 Porin 7.3E-77 15-863 849 1

3 ORFs

Contig Location Length Strand Sequence
3-872 870 1
86-286 201 -1
644-748 105 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF315091 9.8E-89 3 297.7 0.8017159 27-867 841 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)