Transcript : dd_Smed_v6_2119_0_1 S. mediterranea

Length  1049     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
 Feedback

Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_035824.1 Mus musculus voltage-dependent anion channel 1 1.0E-63 18-866 849 1
NP_003365.1 Homo sapiens voltage dependent anion channel 1 2.0E-63 18-866 849 1
XP_006267451.1 Alligator mississippiensis voltage-dependent anion channel 2 3.0E-69 18-860 843 1

7 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11743 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 7.9E-95 3-869 867 1
PR00185 PRINTS IPR001925 Eukaryotic porin signature 5.59E-13 762-812 51 1
PR00185 PRINTS IPR001925 Eukaryotic porin signature 5.59E-13 216-260 45 1
PR00185 PRINTS IPR001925 Eukaryotic porin signature 5.59E-13 462-494 33 1
PR00185 PRINTS IPR001925 Eukaryotic porin signature 5.59E-13 30-74 45 1
PF01459 PFAM IPR027246 Eukaryotic porin 3.4E-55 27-848 822 1
G3DSA:2.40.160.10 GENE3D IPR023614 Porin 7.3E-77 15-863 849 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
3-872 870 1
86-286 201 -1
644-748 105 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF315091 9.8E-89 3 297.7 0.8017159 27-867 841 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)