Contig : dd_Smed_v6_20_0_1 S. mediterranea

Id  dd_Smed_v6_20_0_1 Length  854    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_055300.1 Homo sapiens hematopoietic prostaglandin D synthase 5.0E-27 177-776 600 1
NP_062328.3 Mus musculus hematopoietic prostaglandin D synthase 2.0E-26 177-776 600 1
XP_007063065.1 Chelonia mydas hematopoietic prostaglandin D synthase 1.0E-32 177-776 600 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF52833 SSF IPR012336 Thioredoxin-like 1.36E-18 177-401 225 1
PS50404 PROFILE IPR004045 Soluble glutathione S-transferase N-terminal domain profile. 25.405 180-410 231 1
PS50405 PROFILE IPR010987 Soluble glutathione S-transferase C-terminal domain profile. 15.763 417-773 357 1
PF00043 PFAM IPR004046 Glutathione S-transferase, C-terminal domain 2.8E-6 510-719 210 1
PF02798 PFAM IPR004045 Glutathione S-transferase, N-terminal domain 3.0E-14 189-392 204 1
PTHR11571 PANTHER GLUTATHIONE S-TRANSFERASE 5.7E-59 177-773 597 1
G3DSA:1.20.1050.10 GENE3D IPR010987   3.1E-20 432-770 339 1
SSF47616 SSF IPR010987 GST C-terminal domain-like 4.26E-20 393-770 378 1
PTHR11571:SF118 PANTHER HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE 5.7E-59 177-773 597 1
G3DSA:3.40.30.10 GENE3D IPR012336 Glutaredoxin 1.1E-32 183-428 246 1

1 ORFs

Contig Location Length Strand Sequence
177-776 600 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF353041 1.8E-49 3 168.0 0.6861827 189-774 586 1
TF353040 3.1E-12 3 45.0 0.42271662 357-717 361 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)