Transcript : dd_Smed_v6_20717_0_1 S. mediterranea

Length  1159     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005908.1 Homo sapiens malate dehydrogenase 1 8.0E-137 92-1012 921 1
NP_032644.3 Mus musculus malate dehydrogenase 1, NAD (soluble) 7.0E-135 92-1012 921 1
XP_004609244.1 Sorex araneus malate dehydrogenase 1, NAD (soluble) 5.0E-140 92-1012 921 1

10 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00056 PFAM IPR001236 lactate/malate dehydrogenase, NAD binding domain 3.0E-35 107-544 438 1
TIGR01758 TIGRFAMs IPR011274 MDH_euk_cyt: malate dehydrogenase, NAD-dependent 2.8E-155 110-1069 960 1
PF02866 PFAM IPR022383 lactate/malate dehydrogenase, alpha/beta C-terminal domain 1.6E-43 557-1069 513 1
PTHR23382 PANTHER IPR010945 MALATE DEHYDROGENASE 3.4E-209 92-1075 984 1
G3DSA:3.90.110.10 GENE3D IPR015955 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2 1.6E-73 554-1069 516 1
G3DSA:3.40.50.720 GENE3D IPR016040 NAD(P)-binding Rossmann-like Domain 5.5E-56 98-547 450 1
SSF56327 SSF IPR015955 LDH C-terminal domain-like 3.71E-57 557-1069 513 1
PS00068 PROSITE IPR001252 Malate dehydrogenase active site signature. 0.0 554-589 36 1
SSF51735 SSF NAD(P)-binding Rossmann-fold domains 5.4E-43 101-547 447 1
TIGR01759 TIGRFAMs IPR010945 MalateDH-SF1: malate dehydrogenase 1.6E-148 98-1063 966 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
92-1081 990 1
853-960 108 -1
5-109 105 -1
752-853 102 -1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF329007 3.0E-48 2 163.5 0.51596206 78-675 598 1
TF105826 6.0E-222 2 738.1 0.8446937 102-1080 979 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)