Contig : dd_Smed_v6_20717_0_1 S. mediterranea

Id  dd_Smed_v6_20717_0_1 Length  1159    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_005908.1 Homo sapiens malate dehydrogenase 1, NAD (soluble) 8.0E-137 92-1012 921 1
NP_032644.3 Mus musculus malate dehydrogenase 1, NAD (soluble) 7.0E-135 92-1012 921 1
XP_004609244.1 Sorex araneus malate dehydrogenase 1, NAD (soluble) 5.0E-140 92-1012 921 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00056 PFAM IPR001236 lactate/malate dehydrogenase, NAD binding domain 3.0E-35 107-544 438 1
TIGR01758 TIGRFAMs IPR011274 MDH_euk_cyt: malate dehydrogenase, NAD-dependent 2.8E-155 110-1069 960 1
PF02866 PFAM IPR022383 lactate/malate dehydrogenase, alpha/beta C-terminal domain 1.6E-43 557-1069 513 1
PTHR23382 PANTHER IPR010945 MALATE DEHYDROGENASE 3.4E-209 92-1075 984 1
G3DSA:3.90.110.10 GENE3D IPR015955 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2 1.6E-73 554-1069 516 1
G3DSA:3.40.50.720 GENE3D IPR016040 NAD(P)-binding Rossmann-like Domain 5.5E-56 98-547 450 1
SSF56327 SSF IPR015955 LDH C-terminal domain-like 3.71E-57 557-1069 513 1
PS00068 PROSITE IPR001252 Malate dehydrogenase active site signature. 0.0 554-589 36 1
SSF51735 SSF NAD(P)-binding Rossmann-fold domains 5.4E-43 101-547 447 1
TIGR01759 TIGRFAMs IPR010945 MalateDH-SF1: malate dehydrogenase 1.6E-148 98-1063 966 1

4 ORFs

Contig Location Length Strand Sequence
92-1081 990 1
853-960 108 -1
5-109 105 -1
752-853 102 -1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF329007 3.0E-48 2 163.5 0.51596206 78-675 598 1
TF105826 6.0E-222 2 738.1 0.8446937 102-1080 979 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)