Contig : dd_Smed_v6_2065_0_1 S. mediterranea

Id  dd_Smed_v6_2065_0_1 Length  1535    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002884.1 Homo sapiens retinoblastoma binding protein 7 0.0 94-1335 1242 1
NP_524354.1 Drosophila melanogaster Chromatin assembly factor 1 subunit 0.0 94-1350 1257 1
NP_990183.1 Gallus gallus retinoblastoma binding protein 4 0.0 85-1347 1263 1

28 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 9.339 739-864 126 1
PR00320 PRINTS IPR020472 G protein beta WD-40 repeat signature 2.1E-8 1069-1110 42 1
PR00320 PRINTS IPR020472 G protein beta WD-40 repeat signature 2.1E-8 649-690 42 1
PR00320 PRINTS IPR020472 G protein beta WD-40 repeat signature 2.1E-8 937-978 42 1
PTHR22850 PANTHER WD40 REPEAT FAMILY 8.8E-278 94-1332 1239 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 9.606 1180-1281 102 1
PF12265 PFAM IPR022052 Histone-binding protein RBBP4 or subunit C of CAF1 complex 3.3E-27 124-333 210 1
PS00678 PROSITE IPR019775 Trp-Asp (WD) repeats signature. 0.0 649-690 42 1
G3DSA:2.130.10.10 GENE3D IPR015943 YVTN repeat-like/Quinoprotein amine dehydrogenase 2.9E-60 310-1287 978 1
PTHR22850:SF82 PANTHER HISTONE-BINDING PROTEIN RBBP7 8.8E-278 94-1332 1239 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 12.848 589-714 126 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 13.683 877-984 108 1
SM00320 SMART IPR001680 WD40 repeats 3.6E-7 988-1107 120 1
SM00320 SMART IPR001680 WD40 repeats 6.7E-6 568-687 120 1
SM00320 SMART IPR001680 WD40 repeats 0.081 718-837 120 1
SM00320 SMART IPR001680 WD40 repeats 5.1 406-528 123 1
SM00320 SMART IPR001680 WD40 repeats 3.3E-5 1159-1278 120 1
SM00320 SMART IPR001680 WD40 repeats 1.2E-8 856-975 120 1
PS00678 PROSITE IPR019775 Trp-Asp (WD) repeats signature. 0.0 937-978 42 1
PS50294 PROFILE IPR017986 Trp-Asp (WD) repeats circular profile. 36.701 589-1305 717 1
PS00678 PROSITE IPR019775 Trp-Asp (WD) repeats signature. 0.0 1069-1110 42 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 4.4E-6 1000-1107 108 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 4.2E-4 730-837 108 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 1.3E-8 865-975 111 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 3.8E-6 1168-1275 108 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 2.0E-7 583-687 105 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 12.848 1009-1113 105 1
SSF50978 SSF IPR017986 WD40 repeat-like 5.83E-56 412-1296 885 1

5 ORFs

Contig Location Length Strand Sequence
79-1350 1272 1
592-780 189 -1
1145-1312 168 1
665-808 144 1
313-441 129 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF106485 0.0 1 1025.0 0.7960912 111-1332 1222 1
TF312982 1.7E-25 1 88.0 0.49120522 435-1188 754 1
TF328741 9.3E-13 1 47.6 0.43843648 438-1110 673 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)