Contig : dd_Smed_v6_20599_0_1 S. mediterranea

Id  dd_Smed_v6_20599_0_1 Length  1519    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_003370753.1 Trichinella spiralis retrovirus-related Pol polyprotein from transposon 412 8.0E-75 193-1497 1305 1
XP_004336571.1 Acanthamoeba castellanii str. Neff GapPol polyprotein 1.0E-63 502-1422 921 1
XP_002121256.2 Ciona intestinalis zinc finger (CCHC)-26 2.0E-52 676-1512 837 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF56672 SSF DNA/RNA polymerases 8.89E-9 226-396 171 1
PTHR24559:SF165 PANTHER SUBFAMILY NOT NAMED 1.0E-67 436-1509 1074 1
PS50994 PROFILE IPR001584 Integrase catalytic domain profile. 25.37 922-1398 477 1
PTHR24559 PANTHER FAMILY NOT NAMED 1.0E-67 436-1509 1074 1
G3DSA:3.30.420.10 GENE3D IPR012337   2.8E-38 934-1413 480 1
SSF53098 SSF IPR012337 Ribonuclease H-like 4.81E-42 913-1380 468 1
PF00665 PFAM IPR001584 Integrase core domain 7.5E-23 928-1269 342 1
SSF56672 SSF DNA/RNA polymerases 8.0E-11 5-166 162 1

7 ORFs

Contig Location Length Strand Sequence
355-1518 1164 1
894-1229 336 1
707-970 264 -1
768-1001 234 -1
306-509 204 -1
2-172 171 1
1284-1409 126 -1

9 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF344122 3.3E-68 1 228.3 0.86570114 195-1509 1315 1
TF352303 1.5E-37 1 129.6 0.40552995 195-810 616 1
TF329121 1.6E-74 1 249.6 0.59512836 519-1422 904 1
TF352301 6.2E-64 1 215.7 0.48057932 690-1419 730 1
TF352305 7.3E-53 1 177.4 0.518104 699-1485 787 1
TF343122 1.2E-89 1 300.1 0.5299539 705-1509 805 1
TF323092 4.0E-73 1 246.3 0.49242923 747-1494 748 1
TF342895 2.7E-18 1 63.2 0.42132983 762-1401 640 1
TF323003 6.3E-36 1 121.7 0.4233048 783-1425 643 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)