Contig : dd_Smed_v6_204_0_1 S. mediterranea

Id  dd_Smed_v6_204_0_1 Length  732    Open in Genome Browser

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Planmine Rnai Result Displayer

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Homologue Displayer

Organism Field Displayer

Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001002.1 Homo sapiens ribosomal protein S7 9.0E-64 70-636 567 1
XP_006527598.1 Mus musculus 40S ribosomal protein S7-like 8.0E-63 73-636 564 1
NP_651782.1 Drosophila melanogaster Ribosomal protein S7 9.0E-59 67-636 570 1

3 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11278 PANTHER IPR000554 40S RIBOSOMAL PROTEIN S7 1.3E-98 67-633 567 1
PF01251 PFAM IPR000554 Ribosomal protein S7e 3.3E-71 76-624 549 1
PTHR11278:SF0 PANTHER 40S RIBOSOMAL PROTEIN S7 1.3E-98 67-633 567 1

3 ORFs

Contig Location Length Strand Sequence
67-636 570 1
432-731 300 -1
596-730 135 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF343364 2.1E-87 1 292.7 0.76775956 72-633 562 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)