Transcript : dd_Smed_v6_204_0_1 S. mediterranea

Length  732     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001002.1 Homo sapiens ribosomal protein S7 9.0E-64 70-636 567 1
XP_006527598.1 Mus musculus 40S ribosomal protein S7-like 8.0E-63 73-636 564 1
NP_651782.1 Drosophila melanogaster Ribosomal protein S7 9.0E-59 67-636 570 1

3 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR11278 PANTHER IPR000554 40S RIBOSOMAL PROTEIN S7 1.3E-98 67-633 567 1
PF01251 PFAM IPR000554 Ribosomal protein S7e 3.3E-71 76-624 549 1
PTHR11278:SF0 PANTHER 40S RIBOSOMAL PROTEIN S7 1.3E-98 67-633 567 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
67-636 570 1
432-731 300 -1
596-730 135 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF343364 2.1E-87 1 292.7 0.76775956 72-633 562 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)