Transcript : dd_Smed_v6_201_0_1 S. mediterranea

Length  570     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067200.1, clone H.88.4g unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001009.1 Homo sapiens ribosomal protein S15 1.0E-59 85-516 432 1
XP_006544047.1 Mus musculus 40S ribosomal protein S15-like 4.0E-59 85-516 432 1
XP_002735558.1 Saccoglossus kowalevskii 40S ribosomal protein S15-like 2.0E-60 100-516 417 1

9 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00975 PRINTS IPR002222 Ribosomal protein S19 family signature 2.46E-14 373-408 36 1
PR00975 PRINTS IPR002222 Ribosomal protein S19 family signature 2.46E-14 313-369 57 1
PR00975 PRINTS IPR002222 Ribosomal protein S19 family signature 2.46E-14 409-453 45 1
PTHR11880 PANTHER IPR002222 RIBOSOMAL PROTEIN S19P FAMILY MEMBER 1.1E-89 55-513 459 1
PS00323 PROSITE IPR020934 Ribosomal protein S19 signature. 0.0 373-444 72 1
PF00203 PFAM IPR002222 Ribosomal protein S19 4.0E-32 217-462 246 1
SSF54570 SSF IPR023575 Ribosomal protein S19 3.92E-29 247-465 219 1
G3DSA:3.30.860.10 GENE3D IPR023575 30s Ribosomal Protein S19; Chain A 1.9E-34 214-492 279 1
TIGR01025 TIGRFAMs IPR005713 rpsS_arch: ribosomal protein S19 6.4E-65 112-513 402 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

2 ORFs

Contig Location Length Strand Sequence
88-516 429 1
426-569 144 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF318650 2.6E-91 1 304.9 0.7280702 102-516 415 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)