Contig : dd_Smed_v6_201_0_1 S. mediterranea
Id  dd_Smed_v6_201_0_1 Length  570    Open in Genome Browser
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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001009.1 Homo sapiens ribosomal protein S15 1.0E-59 85-516 432 1
XP_006544047.1 Mus musculus 40S ribosomal protein S15-like 4.0E-59 85-516 432 1
XP_002735558.1 Saccoglossus kowalevskii 40S ribosomal protein S15-like 2.0E-60 100-516 417 1

9 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00975 PRINTS IPR002222 Ribosomal protein S19 family signature 2.46E-14 373-408 36 1
PR00975 PRINTS IPR002222 Ribosomal protein S19 family signature 2.46E-14 313-369 57 1
PR00975 PRINTS IPR002222 Ribosomal protein S19 family signature 2.46E-14 409-453 45 1
PTHR11880 PANTHER IPR002222 RIBOSOMAL PROTEIN S19P FAMILY MEMBER 1.1E-89 55-513 459 1
PS00323 PROSITE IPR020934 Ribosomal protein S19 signature. 0.0 373-444 72 1
PF00203 PFAM IPR002222 Ribosomal protein S19 4.0E-32 217-462 246 1
SSF54570 SSF IPR023575 Ribosomal protein S19 3.92E-29 247-465 219 1
G3DSA:3.30.860.10 GENE3D IPR023575 30s Ribosomal Protein S19; Chain A 1.9E-34 214-492 279 1
TIGR01025 TIGRFAMs IPR005713 rpsS_arch: ribosomal protein S19 6.4E-65 112-513 402 1

2 ORFs

Contig Location Length Strand Sequence
88-516 429 1
426-569 144 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF318650 2.6E-91 1 304.9 0.7280702 102-516 415 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)