Contig : dd_Smed_v6_200_0_1 S. mediterranea
Id  dd_Smed_v6_200_0_1 Length  588    Open in Genome Browser
Paste the following link

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000979.1 Homo sapiens ribosomal protein L27 1.0E-25 177-560 384 1
XP_002128439.1 Ciona intestinalis 60S ribosomal protein L27-like 2.0E-26 174-560 387 1
XP_004208596.1 Hydra vulgaris 60S ribosomal protein L27-like 2.0E-26 177-560 384 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10497:SF0 PANTHER 60S RIBOSOMAL PROTEIN L27 3.4E-77 81-557 477 1
PTHR10497 PANTHER IPR001141 60S RIBOSOMAL PROTEIN L27 3.4E-77 81-557 477 1
G3DSA:2.30.30.30 GENE3D IPR014722   1.3E-17 156-488 333 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 3.61E-14 156-557 402 1
PF01777 PFAM IPR001141 Ribosomal L27e protein family 1.4E-31 309-557 249 1

3 ORFs

Contig Location Length Strand Sequence
156-560 405 1
2-109 108 1
484-588 105 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314648 8.7E-71 3 237.6 0.6802721 159-558 400 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)