Contig : dd_Smed_v6_200_0_1 S. mediterranea

Id  dd_Smed_v6_200_0_1 Length  588    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_000979.1 Homo sapiens ribosomal protein L27 1.0E-25 177-560 384 1
XP_002128439.1 Ciona intestinalis 60S ribosomal protein L27-like 2.0E-26 174-560 387 1
XP_004208596.1 Hydra vulgaris 60S ribosomal protein L27-like 2.0E-26 177-560 384 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10497:SF0 PANTHER 60S RIBOSOMAL PROTEIN L27 3.4E-77 81-557 477 1
PTHR10497 PANTHER IPR001141 60S RIBOSOMAL PROTEIN L27 3.4E-77 81-557 477 1
G3DSA:2.30.30.30 GENE3D IPR014722   1.3E-17 156-488 333 1
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 3.61E-14 156-557 402 1
PF01777 PFAM IPR001141 Ribosomal L27e protein family 1.4E-31 309-557 249 1

3 ORFs

Contig Location Length Strand Sequence
156-560 405 1
2-109 108 1
484-588 105 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314648 8.7E-71 3 237.6 0.6802721 159-558 400 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)