Contig : dd_Smed_v6_196_0_1 S. mediterranea

Id  dd_Smed_v6_196_0_1 Length  2137    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_083270.1 Mus musculus phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.0 161-1987 1827 1
NP_004554.3 Homo sapiens phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.0 161-1987 1827 1
NP_497134.1 Caenorhabditis elegans Protein PCK-1 0.0 101-1987 1887 1

8 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00821 PFAM IPR008209 Phosphoenolpyruvate carboxykinase 4.6E-265 206-1981 1776 1
PS00505 PROSITE IPR018091 Phosphoenolpyruvate carboxykinase (GTP) signature. 0.0 971-994 24 1
G3DSA:3.90.228.20 GENE3D IPR013035   2.3E-102 1166-1981 816 1
G3DSA:3.90.228.20 GENE3D IPR013035   3.0E-32 899-1105 207 1
PTHR11561 PANTHER IPR008209 PHOSPHOENOLPYRUVATE CARBOXYKINASE 0.0 86-1984 1899 1
SSF68923 SSF IPR008210 PEP carboxykinase N-terminal domain 4.97E-94 152-895 744 1
G3DSA:3.40.449.10 GENE3D IPR008210 Phosphoenolpyruvate Carboxykinase, domain 1 6.9E-92 155-895 741 1
SSF53795 SSF PEP carboxykinase-like 1.6E-152 899-1981 1083 1

7 ORFs

Contig Location Length Strand Sequence
86-1987 1902 1
1415-1663 249 -1
602-784 183 -1
888-1064 177 1
1612-1788 177 -1
889-1056 168 -1
319-420 102 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314402 0.0 2 1231.6 0.8525971 165-1986 1822 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)