Transcript : dd_Smed_v6_196_0_1 S. mediterranea

Length  2137     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_083270.1 Mus musculus phosphoenolpyruvate carboxykinase 2 (mitochondrial) 0.0 161-1987 1827 1
NP_004554.3 Homo sapiens phosphoenolpyruvate carboxykinase 2, mitochondrial 0.0 161-1987 1827 1
NP_497134.1 Caenorhabditis elegans Phosphoenolypyruvate CarboxyKinase 0.0 101-1987 1887 1

8 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00821 PFAM IPR008209 Phosphoenolpyruvate carboxykinase 4.6E-265 206-1981 1776 1
PS00505 PROSITE IPR018091 Phosphoenolpyruvate carboxykinase (GTP) signature. 0.0 971-994 24 1
G3DSA:3.90.228.20 GENE3D IPR013035   2.3E-102 1166-1981 816 1
G3DSA:3.90.228.20 GENE3D IPR013035   3.0E-32 899-1105 207 1
PTHR11561 PANTHER IPR008209 PHOSPHOENOLPYRUVATE CARBOXYKINASE 0.0 86-1984 1899 1
SSF68923 SSF IPR008210 PEP carboxykinase N-terminal domain 4.97E-94 152-895 744 1
G3DSA:3.40.449.10 GENE3D IPR008210 Phosphoenolpyruvate Carboxykinase, domain 1 6.9E-92 155-895 741 1
SSF53795 SSF PEP carboxykinase-like 1.6E-152 899-1981 1083 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

7 ORFs

Contig Location Length Strand Sequence
86-1987 1902 1
1415-1663 249 -1
602-784 183 -1
888-1064 177 1
1612-1788 177 -1
889-1056 168 -1
319-420 102 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314402 0.0 2 1231.6 0.8525971 165-1986 1822 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)