Contig : dd_Smed_v6_195_0_1 S. mediterranea

Id  dd_Smed_v6_195_0_1 Length  498    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001012.1 Homo sapiens ribosomal protein S17 1.0E-51 65-439 375 1
NP_033118.1 Mus musculus ribosomal protein S17 1.0E-51 65-439 375 1
XP_005281018.1 Chrysemys picta bellii ribosomal protein S17 7.0E-52 65-424 360 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10732:SF0 PANTHER 40S RIBOSOMAL PROTEIN S17-RELATED 2.3E-75 59-430 372 1
SSF116820 SSF IPR001210 Rps17e-like 3.4E-22 65-247 183 1
PF00833 PFAM IPR001210 Ribosomal S17 1.6E-52 65-415 351 1
G3DSA:1.10.60.20 GENE3D IPR001210 30s ribosomal protein s17e 2.1E-31 65-247 183 1
PTHR10732 PANTHER IPR001210 40S RIBOSOMAL PROTEIN S17 2.3E-75 59-430 372 1

1 ORFs

Contig Location Length Strand Sequence
65-448 384 1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317992 8.2E-45 2 151.1 0.6345382 111-426 316 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)