Transcript : dd_Smed_v6_195_0_1 S. mediterranea

Length  498     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001012.1 Homo sapiens ribosomal protein S17 1.0E-51 65-439 375 1
NP_033118.1 Mus musculus ribosomal protein S17 1.0E-51 65-439 375 1
XP_005281018.1 Chrysemys picta bellii ribosomal protein S17 7.0E-52 65-424 360 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PTHR10732:SF0 PANTHER 40S RIBOSOMAL PROTEIN S17-RELATED 2.3E-75 59-430 372 1
SSF116820 SSF IPR001210 Rps17e-like 3.4E-22 65-247 183 1
PF00833 PFAM IPR001210 Ribosomal S17 1.6E-52 65-415 351 1
G3DSA:1.10.60.20 GENE3D IPR001210 30s ribosomal protein s17e 2.1E-31 65-247 183 1
PTHR10732 PANTHER IPR001210 40S RIBOSOMAL PROTEIN S17 2.3E-75 59-430 372 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
65-448 384 1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF317992 8.2E-45 2 151.1 0.6345382 111-426 316 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)