Contig : dd_Smed_v6_194_0_1 S. mediterranea

Id  dd_Smed_v6_194_0_1 Length  17568    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006710064.1 Homo sapiens apolipophorins-like 8.0E-47 1131-2480 1350 1
NP_995670.2 Drosophila melanogaster Apolipoprotein lipid transfer particle 3.0E-41 465-2174 1710 1
XP_006820902.1 Saccoglossus kowalevskii apolipophorins-like 8.0E-105 87-3122 3036 1

17 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:2.20.80.10 GENE3D IPR015818 Lipovitellin-phosvitin complex, chain A, domain 4 3.4E-7 2346-2909 564 1
PS50234 PROFILE IPR002035 VWFA domain profile. 9.989 16737-17390 654 1
G3DSA:1.25.10.20 GENE3D IPR011030 Lipovitellin. Chain A, domain 2 8.4E-46 966-1901 936 1
PF09172 PFAM IPR015255 Domain of unknown function (DUF1943) 5.6E-39 1944-2735 792 1
SSF56968 SSF IPR015819 Lipovitellin-phosvitin complex; beta-sheet shell regions 1.06E-22 180-857 678 1
SM00216 SMART IPR001846 von Willebrand factor (vWF) type D domain 6.0E-9 15867-16325 459 1
PF08742 PFAM IPR014853 C8 domain 6.2E-6 16455-16640 186 1
G3DSA:2.30.230.10 GENE3D IPR015816 Lipovitellin; beta-sheet shell regions, chain A 3.5E-23 180-860 681 1
SM00638 SMART IPR001747 Lipoprotein N-terminal Domain 4.1E-8 180-1847 1668 1
PF01347 PFAM IPR001747 Lipoprotein amino terminal region 4.7E-39 180-1844 1665 1
PTHR23345 PANTHER VITELLOGENIN-RELATED 3.1E-87 162-16388 16227 1
G3DSA:2.20.50.20 GENE3D IPR015817 Lipovitellin. Chain A, domain 3 2.9E-18 1944-2270 327 1
SSF56968 SSF IPR015819 Lipovitellin-phosvitin complex; beta-sheet shell regions 1.8E-45 1944-2951 1008 1
PF00094 PFAM IPR001846 von Willebrand factor type D domain 2.7E-10 15903-16325 423 1
PS51233 PROFILE IPR001846 VWFD domain profile. 22.544 15891-16508 618 1
PS51211 PROFILE IPR001747 Vitellogenin domain profile. 19.637 180-2045 1866 1
SSF48431 SSF IPR011030 Lipovitellin-phosvitin complex, superhelical domain 4.71E-29 969-1889 921 1

41 ORFs

Contig Location Length Strand Sequence
60-17501 17442 1
10854-11201 348 -1
7247-7537 291 -1
11251-11493 243 -1
4319-4543 225 -1
9035-9256 222 -1
5523-5744 222 -1
2705-2917 213 -1
3981-4160 180 -1
1099-1278 180 -1
878-1054 177 -1
17024-17197 174 -1
2342-2512 171 -1
3068-3223 156 -1
8123-8266 144 -1
17395-17535 141 -1
1820-1960 141 -1
16616-16750 135 -1
16538-16666 129 1
13738-13866 129 -1
10483-10608 126 1
14433-14555 123 -1
2436-2558 123 -1
15496-15615 120 1
16932-17051 120 -1
15896-16015 120 -1
14867-14986 120 -1
395-514 120 -1
13229-13345 117 -1
3524-3640 117 -1

0 Treefam SequenceFeatures

 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)