Contig : dd_Smed_v6_1881_0_1 S. mediterranea

Id  dd_Smed_v6_1881_0_1 Length  1114    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

0 Blast SequenceFeatures

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54648 SSF DLC 9.55E-19 738-1001 264 1
PTHR11886:SF42 PANTHER SUBFAMILY NOT NAMED 8.5E-37 480-1004 525 1
SSF47473 SSF EF-hand 5.67E-13 489-677 189 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 54.0 489-572 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.13 591-674 84 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 618-653 36 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 8.5E-37 480-1004 525 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.7E-13 750-1001 252 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 11.78 579-683 105 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.4E-12 492-698 207 1
PF13499 PFAM IPR011992 EF-hand domain pair 6.1E-11 498-659 162 1
PF01221 PFAM IPR001372 Dynein light chain type 1 5.8E-11 753-1001 249 1

3 ORFs

Contig Location Length Strand Sequence
483-1010 528 1
527-715 189 -1
356-514 159 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 3.5E-56 3 190.1 0.46678635 483-1002 520 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)