Transcript : dd_Smed_v6_1881_0_1 S. mediterranea

Length  1114     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

0 Blast Sequence Features

12 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54648 SSF DLC 9.55E-19 738-1001 264 1
PTHR11886:SF42 PANTHER SUBFAMILY NOT NAMED 8.5E-37 480-1004 525 1
SSF47473 SSF EF-hand 5.67E-13 489-677 189 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 54.0 489-572 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.13 591-674 84 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 618-653 36 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 8.5E-37 480-1004 525 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.7E-13 750-1001 252 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 11.78 579-683 105 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.4E-12 492-698 207 1
PF13499 PFAM IPR011992 EF-hand domain pair 6.1E-11 498-659 162 1
PF01221 PFAM IPR001372 Dynein light chain type 1 5.8E-11 753-1001 249 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
483-1010 528 1
527-715 189 -1
356-514 159 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 3.5E-56 3 190.1 0.46678635 483-1002 520 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)