Contig : dd_Smed_v6_1881_0_1 S. mediterranea
Id  dd_Smed_v6_1881_0_1 Length  1114    Open in Genome Browser
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Genes

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SequenceFeatures

0 Blast SequenceFeatures

12 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54648 SSF DLC 9.55E-19 738-1001 264 1
PTHR11886:SF42 PANTHER SUBFAMILY NOT NAMED 8.5E-37 480-1004 525 1
SSF47473 SSF EF-hand 5.67E-13 489-677 189 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 54.0 489-572 84 1
SM00054 SMART IPR002048 EF-hand, calcium binding motif 0.13 591-674 84 1
PS00018 PROSITE IPR018247 EF-hand calcium-binding domain. 0.0 618-653 36 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 8.5E-37 480-1004 525 1
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1.7E-13 750-1001 252 1
PS50222 PROFILE IPR002048 EF-hand calcium-binding domain profile. 11.78 579-683 105 1
G3DSA:1.10.238.10 GENE3D IPR011992 EF-hand 1.4E-12 492-698 207 1
PF13499 PFAM IPR011992 EF-hand domain pair 6.1E-11 498-659 162 1
PF01221 PFAM IPR001372 Dynein light chain type 1 5.8E-11 753-1001 249 1

3 ORFs

Contig Location Length Strand Sequence
483-1010 528 1
527-715 189 -1
356-514 159 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF351232 3.5E-56 3 190.1 0.46678635 483-1002 520 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)