Contig : dd_Smed_v6_186_0_1 S. mediterranea

Id  dd_Smed_v6_186_0_1 Length  2674    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_525105.2 Drosophila melanogaster Elongation factor 2 0.0 101-2647 2547 1
NP_031933.1 Mus musculus eukaryotic translation elongation factor 2 0.0 101-2647 2547 1
NP_990699.1 Gallus gallus eukaryotic translation elongation factor 2 0.0 101-2647 2547 1

28 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PS00301 PROSITE IPR000795 GTP-binding elongation factors signature. 0.0 272-316 45 1
TIGR00231 TIGRFAMs IPR005225 small_GTP: small GTP-binding protein domain 2.8E-17 158-619 462 1
G3DSA:2.40.30.10 GENE3D Translation factors 2.9E-54 1136-1570 435 1
SSF54211 SSF IPR020568 Ribosomal protein S5 domain 2-like 1.06E-62 1802-2293 492 1
PTHR23115 PANTHER TRANSLATION FACTOR 0.0 101-2644 2544 1
G3DSA:3.30.230.10 GENE3D IPR014721   7.4E-63 1832-2293 462 1
SSF54980 SSF IPR009022 EF-G C-terminal domain-like 4.17E-31 2297-2635 339 1
SSF54980 SSF IPR009022 EF-G C-terminal domain-like 4.32E-21 1571-1795 225 1
PTHR23115:SF103 PANTHER SUBFAMILY NOT NAMED 0.0 101-2644 2544 1
PF14492 PFAM IPR009022 Elongation Factor G, domain II 2.3E-15 1580-1765 186 1
SSF50447 SSF IPR009000 Translation proteins 5.08E-42 1151-1558 408 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.5E-72 407-793 387 1
G3DSA:3.40.50.300 GENE3D IPR027417 P-loop containing nucleotide triphosphate hydrolases 2.5E-72 101-310 210 1
G3DSA:3.90.1430.10 GENE3D Yeast translation eEF2 (G' domain) 1.3E-32 803-1102 300 1
G3DSA:3.30.70.870 GENE3D Elongation Factor G (Translational Gtpase), domain 3 8.5E-27 1577-1798 222 1
G3DSA:3.30.70.240 GENE3D IPR000640   2.0E-39 2297-2602 306 1
PF03144 PFAM IPR004161 Elongation factor Tu domain 2 8.9E-13 1301-1519 219 1
SM00838 SMART IPR000640 Elongation factor G C-terminus 2.5E-17 2288-2554 267 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 3.7E-13 431-460 30 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 3.7E-13 479-511 33 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 3.7E-13 293-316 24 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 3.7E-13 587-613 27 1
PR00315 PRINTS IPR000795 GTP-binding elongation factor signature 3.7E-13 161-199 39 1
SM00889 SMART IPR005517 Elongation factor G, domain IV 6.6E-25 1922-2281 360 1
PF00679 PFAM IPR000640 Elongation factor G C-terminus 3.6E-20 2291-2548 258 1
SSF52540 SSF IPR027417 P-loop containing nucleoside triphosphate hydrolases 2.25E-103 110-1147 1038 1
PF00009 PFAM IPR000795 Elongation factor Tu GTP binding domain 2.8E-60 152-1135 984 1
PF03764 PFAM IPR005517 Elongation factor G, domain IV 9.8E-34 1940-2281 342 1

7 ORFs

Contig Location Length Strand Sequence
101-2647 2547 1
1926-2087 162 1
190-330 141 -1
1129-1266 138 -1
2090-2218 129 -1
1549-1671 123 -1
498-599 102 1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF105703 1.7E-226 2 754.0 0.94727004 108-2640 2533 1
TF300575 0.0 2 1795.9 0.9046373 138-2556 2419 1
TF352635 4.3E-218 2 725.9 0.41211668 1545-2646 1102 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)