Contig : dd_Smed_v6_176_0_2 S. mediterranea

Id  dd_Smed_v6_176_0_2 Length  341    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_061828.1 Homo sapiens ubiquitin B 5.0E-47 2-244 243 1
XP_003494613.1 Bombus impatiens polyubiquitin-A-like 1.0E-48 2-244 243 1
XP_001701379.1 Chlamydomonas reinhardtii bi-ubiquitin, major isoform 2.0E-48 2-244 243 1

10 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00240 PFAM IPR000626 Ubiquitin family 1.0E-35 32-235 204 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 30.713 17-241 225 1
PTHR10666 PANTHER UBIQUITIN 2.6E-68 2-241 240 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 1.4E-51 11-238 228 1
SM00213 SMART IPR000626 Ubiquitin homologues 1.2E-35 17-229 213 1
PS00299 PROSITE IPR019954 Ubiquitin domain signature. 0.0 95-169 75 1
SSF54236 SSF IPR029071 Ubiquitin-like 3.94E-36 8-241 234 1
PR00348 PRINTS IPR019956 Ubiquitin signature 1.98E-39 110-169 60 1
PR00348 PRINTS IPR019956 Ubiquitin signature 1.98E-39 173-235 63 1
PR00348 PRINTS IPR019956 Ubiquitin signature 1.98E-39 47-106 60 1

1 ORFs

Contig Location Length Strand Sequence
2-244 243 1

31 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354256 5.6E-63 2 211.9 0.7155425 3-246 244 1
TF300820 2.0E-60 2 203.9 0.7859238 3-270 268 1
TF352129 8.6E-55 2 185.4 0.6803519 18-249 232 1
TF338379 3.1E-33 2 114.0 0.6627566 18-243 226 1
TF300201 1.9E-27 2 95.1 0.6627566 18-243 226 1
TF313779 3.2E-22 2 78.8 0.6627566 18-243 226 1
TF354228 9.6E-22 2 76.8 0.627566 18-231 214 1
TF101216 8.8E-18 2 63.7 0.53958946 18-201 184 1
TF106434 2.5E-13 2 47.8 0.627566 18-231 214 1
TF354229 1.6E-19 2 68.6 0.5835777 21-219 199 1
TF323925 1.7E-15 2 55.7 0.53958946 21-204 184 1
TF314412 3.2E-10 2 37.8 0.6099707 24-231 208 1
TF314529 4.7E-19 2 67.4 0.61876833 27-237 211 1
TF328437 1.8E-11 2 41.6 0.59237534 30-231 202 1
TF333421 1.3E-7 2 29.9 0.5835777 33-231 199 1
TF300072 1.5E-39 2 133.7 0.61876833 36-246 211 1
TF323449 2.2E-6 2 24.5 0.49560118 36-204 169 1
TF105705 7.5E-9 2 33.4 0.60117304 39-243 205 1
TF314172 7.7E-5 2 20.5 0.5219941 45-222 178 1
TF323180 0.0014 2 14.7 0.5219941 45-222 178 1
TF319739 9.0E-11 2 39.4 0.49560118 48-216 169 1
TF333280 8.5E-6 2 23.9 0.5219941 48-225 178 1
TF327176 3.7E-9 2 34.8 0.51319647 51-225 175 1
TF323486 3.9E-5 2 21.5 0.46041057 51-207 157 1
TF102011 2.5E-5 2 22.5 0.46041057 54-210 157 1
TF300908 0.001 2 16.4 0.47800586 54-216 163 1
TF343343 5.3E-4 2 17.7 0.5043988 57-228 172 1
TF327355 2.6E-4 2 18.4 0.42521995 60-204 145 1
TF300036 6.8E-29 2 100.7 0.46041057 90-246 157 1
TF329607 1.7E-12 2 45.2 0.44281524 93-243 151 1
 

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0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)