Contig : dd_Smed_v6_1755_0_1 S. mediterranea

Id  dd_Smed_v6_1755_0_1 Length  1271    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_650017.1 Drosophila melanogaster Arginine methyltransferase 1 2.0E-164 137-1141 1005 1
NP_001527.3 Homo sapiens protein arginine methyltransferase 1 2.0E-164 137-1141 1005 1
NP_062804.1 Mus musculus protein arginine N-methyltransferase 1 1.0E-163 137-1141 1005 1

7 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF53335 SSF IPR029063 S-adenosyl-L-methionine-dependent methyltransferases 3.32E-93 173-1135 963 1
G3DSA:3.40.50.150 GENE3D IPR029063 Vaccinia Virus protein VP39 1.0E-44 146-586 441 1
PF13847 PFAM IPR025714 Methyltransferase domain 1.7E-11 269-601 333 1
G3DSA:2.70.160.11 GENE3D Hnrnp arginine n-methyltransferase1 1.2E-64 596-1135 540 1
PTHR11006:SF54 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 5.1E-203 134-1138 1005 1
PS51678 PROFILE IPR025799 SAM-dependent methyltransferase PRMT-type domain profile. 94.11 155-1138 984 1
PTHR11006 PANTHER IPR025799 PROTEIN ARGININE N-METHYLTRANSFERASE 5.1E-203 134-1138 1005 1

3 ORFs

Contig Location Length Strand Sequence
101-1141 1041 1
1-132 132 1
253-357 105 -1

6 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300608 8.9E-234 2 777.7 0.7749803 153-1137 985 1
TF332196 9.5E-76 2 254.5 0.7018096 153-1044 892 1
TF323587 2.8E-156 2 520.9 0.73485446 156-1089 934 1
TF326999 7.8E-62 2 207.9 0.51062155 159-807 649 1
TF328817 2.3E-89 2 299.2 0.4256491 165-705 541 1
TF323332 1.7E-64 2 217.9 0.7277734 165-1089 925 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)