Contig : dd_Smed_v6_174_0_1 S. mediterranea

Id  dd_Smed_v6_174_0_1 Length  1071    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_006089.1 Homo sapiens guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 2.0E-173 78-986 909 1
NP_477269.1 Drosophila melanogaster Receptor of activated protein kinase C 1 4.0E-156 78-986 909 1
NP_001004946.1 Xenopus (Silurana) tropicalis guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 9.0E-174 78-986 909 1

34 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50978 SSF IPR017986 WD40 repeat-like 1.18E-76 87-1004 918 1
G3DSA:2.130.10.10 GENE3D IPR015943 YVTN repeat-like/Quinoprotein amine dehydrogenase 7.2E-42 522-1007 486 1
PR00320 PRINTS IPR020472 G protein beta WD-40 repeat signature 1.2E-8 309-350 42 1
G3DSA:2.130.10.10 GENE3D IPR015943 YVTN repeat-like/Quinoprotein amine dehydrogenase 6.6E-43 90-518 429 1
PS00678 PROSITE IPR019775 Trp-Asp (WD) repeats signature. 0.0 570-611 42 1
PTHR19868:SF0 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2- 3.5E-233 72-1016 945 1
SM00320 SMART IPR001680 WD40 repeats 2.8E-7 615-734 120 1
PS00678 PROSITE IPR019775 Trp-Asp (WD) repeats signature. 0.0 435-476 42 1
PTHR19868 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C (RACK1) 3.5E-233 72-1016 945 1
SM00320 SMART IPR001680 WD40 repeats 3.2E-4 888-1004 117 1
SM00320 SMART IPR001680 WD40 repeats 0.086 744-854 111 1
SM00320 SMART IPR001680 WD40 repeats 4.7E-7 231-347 117 1
SM00320 SMART IPR001680 WD40 repeats 3.8E-11 357-473 117 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 11.511 108-233 126 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 14.352 639-761 123 1
PS00678 PROSITE IPR019775 Trp-Asp (WD) repeats signature. 0.0 168-209 42 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 16.457 252-374 123 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 15.989 378-473 96 1
PS50294 PROFILE IPR017986 Trp-Asp (WD) repeats circular profile. 55.683 108-1016 909 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 4.4E-7 921-1001 81 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 2.3E-7 636-734 99 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 5.9E-12 363-473 111 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 3.0E-10 243-347 105 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 1.5E-9 510-608 99 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 0.0098 753-854 102 1
PF00400 PFAM IPR001680 WD domain, G-beta repeat 1.2E-6 102-206 105 1
SM00320 SMART IPR001680 WD40 repeats 3.7E-6 87-206 120 1
PS00678 PROSITE IPR019775 Trp-Asp (WD) repeats signature. 0.0 696-737 42 1
PS50082 PROFILE IPR001680 Trp-Asp (WD) repeats profile. 11.578 507-635 129 1
PR00320 PRINTS IPR020472 G protein beta WD-40 repeat signature 1.2E-8 696-737 42 1

2 ORFs

Contig Location Length Strand Sequence
78-1019 942 1
962-1069 108 -1

22 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300600 1.3E-208 3 693.0 0.8776844 78-1017 940 1
TF351566 3.2E-16 3 57.9 0.44911298 78-558 481 1
TF324210 1.6E-28 3 99.6 0.4911298 93-618 526 1
TF328741 1.8E-20 3 73.1 0.49953315 93-627 535 1
TF105741 3.5E-25 3 87.1 0.47712418 105-615 511 1
TF106485 2.9E-17 3 61.0 0.47432306 108-615 508 1
TF105224 4.2E-4 3 16.9 0.46031746 129-621 493 1
TF101074 2.2E-28 3 97.5 0.42670402 162-618 457 1
TF105679 3.1E-20 3 71.2 0.64799255 168-861 694 1
TF317832 1.8E-14 3 52.5 0.7824463 171-1008 838 1
TF101074 5.3E-31 3 106.1 0.5751634 246-861 616 1
TF105944 3.3E-18 3 63.3 0.45471522 252-738 487 1
TF324799 3.4E-5 3 20.6 0.45471522 252-738 487 1
TF323866 1.4E-30 3 104.3 0.6844071 261-993 733 1
TF300688 2.5E-15 3 55.4 0.43230626 303-765 463 1
TF106485 7.4E-14 3 49.7 0.40149394 312-741 430 1
TF324700 7.6E-9 3 33.1 0.40149394 312-741 430 1
TF328741 1.0E-12 3 47.4 0.4659197 510-1008 499 1
TF324912 5.6E-21 3 72.5 0.45751634 513-1002 490 1
TF314125 7.6E-19 3 66.2 0.45751634 513-1002 490 1
TF300688 8.0E-7 3 27.3 0.47152194 513-1017 505 1
TF101515 0.0014 3 15.8 0.42950514 576-1035 460 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)