Transcript : dd_Smed_v6_171_0_1 S. mediterranea

Length  892     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002286.2 Homo sapiens ribosomal protein SA 7.0E-90 107-718 612 1
NP_476750.1 Drosophila melanogaster stubarista 6.0E-88 110-694 585 1
XP_006005254.1 Latimeria chalumnae 40S ribosomal protein SA-like 2.0E-91 107-718 612 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 119-172 54 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 431-481 51 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 356-406 51 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 545-586 42 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 209-235 27 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 482-514 33 1
SSF52313 SSF IPR023591 Ribosomal protein S2 1.31E-62 113-673 561 1
TIGR01012 TIGRFAMs IPR005707 Sa_S2_E_A: ribosomal protein S2 6.8E-80 110-688 579 1
PF00318 PFAM IPR001865 Ribosomal protein S2 1.5E-17 128-409 282 1
PF00318 PFAM IPR001865 Ribosomal protein S2 7.2E-18 413-625 213 1
PTHR11489 PANTHER IPR005707 40S RIBOSOMAL PROTEIN SA 6.3E-136 110-712 603 1
PS00963 PROSITE IPR018130 Ribosomal protein S2 signature 2. 0.0 431-502 72 1
G3DSA:3.40.50.10490 GENE3D Glucose-6-phosphate isomerase like protein; domain 1 5.1E-42 167-715 549 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

4 ORFs

Contig Location Length Strand Sequence
92-841 750 1
472-684 213 -1
756-890 135 -1
341-469 129 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300100 3.5E-114 2 382.1 0.66704035 123-717 595 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)