Contig : dd_Smed_v6_171_0_1 S. mediterranea

Id  dd_Smed_v6_171_0_1 Length  892    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_002286.2 Homo sapiens ribosomal protein SA 7.0E-90 107-718 612 1
NP_476750.1 Drosophila melanogaster stubarista 6.0E-88 110-694 585 1
XP_006005254.1 Latimeria chalumnae 40S ribosomal protein SA-like 2.0E-91 107-718 612 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 119-172 54 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 431-481 51 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 356-406 51 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 545-586 42 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 209-235 27 1
PR00395 PRINTS IPR001865 Ribosomal protein S2 signature 1.2E-27 482-514 33 1
SSF52313 SSF IPR023591 Ribosomal protein S2 1.31E-62 113-673 561 1
TIGR01012 TIGRFAMs IPR005707 Sa_S2_E_A: ribosomal protein S2 6.8E-80 110-688 579 1
PF00318 PFAM IPR001865 Ribosomal protein S2 1.5E-17 128-409 282 1
PF00318 PFAM IPR001865 Ribosomal protein S2 7.2E-18 413-625 213 1
PTHR11489 PANTHER IPR005707 40S RIBOSOMAL PROTEIN SA 6.3E-136 110-712 603 1
PS00963 PROSITE IPR018130 Ribosomal protein S2 signature 2. 0.0 431-502 72 1
G3DSA:3.40.50.10490 GENE3D Glucose-6-phosphate isomerase like protein; domain 1 5.1E-42 167-715 549 1

4 ORFs

Contig Location Length Strand Sequence
92-841 750 1
472-684 213 -1
756-890 135 -1
341-469 129 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300100 3.5E-114 2 382.1 0.66704035 123-717 595 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)