Contig : dd_Smed_v6_170_0_1 S. mediterranea

Id  dd_Smed_v6_170_0_1 Length  530    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001011.1 Homo sapiens ribosomal protein S16 3.0E-63 96-509 414 1
XP_003688797.1 Mus musculus 40S ribosomal protein S16-like 3.0E-62 96-509 414 1
XP_003373139.1 Trichinella spiralis 40S ribosomal protein S16 2.0E-67 87-509 423 1

6 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00380 PFAM IPR000754 Ribosomal protein S9/S16 1.3E-36 111-506 396 1
PS00360 PROSITE IPR020574 Ribosomal protein S9 signature. 0.0 291-344 54 1
PTHR21569 PANTHER IPR000754 RIBOSOMAL PROTEIN S9 1.6E-82 96-506 411 1
G3DSA:3.30.230.10 GENE3D IPR014721   2.6E-39 96-506 411 1
SSF54211 SSF IPR020568 Ribosomal protein S5 domain 2-like 4.93E-36 96-506 411 1
PTHR21569:SF4 PANTHER 40S RIBOSOMAL PROTEIN S16 1.6E-82 96-506 411 1

1 ORFs

Contig Location Length Strand Sequence
75-509 435 1

2 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300088 5.0E-84 3 281.3 0.76603776 102-507 406 1
TF106154 2.4E-6 3 24.7 0.72075474 111-492 382 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)