Transcript : dd_Smed_v6_170_0_1 S. mediterranea

Length  530     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_001011.1 Homo sapiens ribosomal protein S16 3.0E-63 96-509 414 1
XP_003688797.1 Mus musculus 40S ribosomal protein S16 3.0E-62 96-509 414 1
XP_003373139.1 Trichinella spiralis 40S ribosomal protein S16 2.0E-67 87-509 423 1

6 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00380 PFAM IPR000754 Ribosomal protein S9/S16 1.3E-36 111-506 396 1
PS00360 PROSITE IPR020574 Ribosomal protein S9 signature. 0.0 291-344 54 1
PTHR21569 PANTHER IPR000754 RIBOSOMAL PROTEIN S9 1.6E-82 96-506 411 1
G3DSA:3.30.230.10 GENE3D IPR014721   2.6E-39 96-506 411 1
SSF54211 SSF IPR020568 Ribosomal protein S5 domain 2-like 4.93E-36 96-506 411 1
PTHR21569:SF4 PANTHER 40S RIBOSOMAL PROTEIN S16 1.6E-82 96-506 411 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

1 ORFs

Contig Location Length Strand Sequence
75-509 435 1

2 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF300088 5.0E-84 3 281.3 0.76603776 102-507 406 1
TF106154 2.4E-6 3 24.7 0.72075474 111-492 382 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)