Transcript : dd_Smed_v6_1702_0_1 S. mediterranea

Length  1052     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_732312.1 Drosophila melanogaster CG31196 gene product from transcript CG31196-RD 7.0E-105 145-846 702 1
NP_006752.1 Homo sapiens tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon 4.0E-101 145-846 702 1
XP_322009.2 Anopheles gambiae str. PEST AGAP001151-PA 1.0E-105 145-846 702 1

13 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.3E-81 394-465 72 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.3E-81 250-336 87 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.3E-81 592-669 78 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.3E-81 754-840 87 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.3E-81 487-552 66 1
SM00101 SMART IPR023410 14-3-3 homologues 1.3E-151 154-873 720 1
PS00796 PROSITE IPR023409 14-3-3 proteins signature 1. 0.0 268-297 30 1
PF00244 PFAM IPR023410 14-3-3 protein 9.4E-110 154-852 699 1
G3DSA:1.20.190.20 GENE3D IPR023410   2.6E-111 145-834 690 1
PR00305 PRINTS IPR000308 14-3-3 protein zeta signature 3.3E-81 673-750 78 1
SSF48445 SSF IPR023410 14-3-3 protein 1.57E-99 145-840 696 1
PS00797 PROSITE IPR023409 14-3-3 proteins signature 2. 0.0 781-837 57 1
PTHR18860 PANTHER IPR000308 14-3-3 PROTEIN 4.2E-163 145-855 711 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
145-900 756 1
291-443 153 -1
698-838 141 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF102002 5.0E-108 1 361.0 0.67110264 156-861 706 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)