Contig : dd_Smed_v6_1697_0_2 S. mediterranea

Id  dd_Smed_v6_1697_0_2 Length  251    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_006495490.1 Citrus sinensis polyubiquitin 4-like 1.0E-50 3-251 249 1
XP_004497490.1 Cicer arietinum polyubiquitin 4-like 4.0E-50 3-251 249 1
XP_004976899.1 Setaria italica polyubiquitin 3-like 4.0E-50 3-251 249 1

13 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 1.8E-23 147-248 102 1
PTHR10666 PANTHER UBIQUITIN 1.3E-70 3-248 246 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 11.769 144-248 105 1
SSF54236 SSF IPR029071 Ubiquitin-like 1.24E-20 3-140 138 1
PR00348 PRINTS IPR019956 Ubiquitin signature 2.4E-25 9-68 60 1
SSF54236 SSF IPR029071 Ubiquitin-like 1.55E-11 141-248 108 1
SM00213 SMART IPR000626 Ubiquitin homologues 0.0026 3-128 126 1
SM00213 SMART IPR000626 Ubiquitin homologues 27.0 144-248 105 1
PS50053 PROFILE IPR000626 Ubiquitin domain profile. 21.524 3-140 138 1
PF00240 PFAM IPR000626 Ubiquitin family 3.8E-10 159-248 90 1
PF00240 PFAM IPR000626 Ubiquitin family 6.1E-22 3-134 132 1
G3DSA:3.10.20.90 GENE3D Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 3.6E-30 3-143 141 1
PR00348 PRINTS IPR019956 Ubiquitin signature 2.4E-25 72-134 63 1

1 ORFs

Contig Location Length Strand Sequence
3-251 249 1

26 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF354256 1.0E-63 3 214.3 0.98406374 3-249 247 1
TF300820 3.6E-60 3 203.0 0.98406374 3-249 247 1
TF352129 6.1E-31 3 107.4 0.55378485 3-141 139 1
TF300072 7.0E-28 3 96.2 0.56573707 3-144 142 1
TF300036 1.4E-25 3 90.0 0.56573707 3-144 142 1
TF338379 1.4E-22 3 78.9 0.55378485 3-141 139 1
TF300201 1.2E-14 3 52.7 0.52988046 3-135 133 1
TF313779 4.8E-11 3 42.0 0.55378485 3-141 139 1
TF106434 1.7E-9 3 35.0 0.5059761 3-129 127 1
TF319739 4.3E-5 3 20.7 0.44621515 3-114 112 1
TF105705 0.0049 3 14.1 0.55378485 3-141 139 1
TF354228 1.3E-11 3 43.5 0.48207173 9-129 121 1
TF354229 2.6E-10 3 38.2 0.42231077 12-117 106 1
TF328437 6.4E-9 3 33.2 0.47011954 12-129 118 1
TF329607 2.5E-9 3 34.7 0.5059761 15-141 127 1
TF327176 1.9E-7 3 29.1 0.43426296 15-123 109 1
TF314529 1.1E-10 3 39.6 0.47011954 18-135 118 1
TF314412 2.5E-7 3 28.3 0.42231077 24-129 106 1
TF352129 1.8E-20 3 73.1 0.42231077 144-249 106 1
TF338379 2.4E-8 3 31.9 0.41035858 144-246 103 1
TF313779 2.1E-7 3 30.0 0.42231077 144-249 106 1
TF300201 7.5E-6 3 23.5 0.42231077 144-249 106 1
TF354228 1.4E-4 3 20.3 0.41035858 144-246 103 1
TF323925 2.1E-4 3 19.1 0.41035858 147-249 103 1
TF354229 5.0E-4 3 17.4 0.41035858 147-249 103 1
TF353890 3.4E-29 6 100.7 0.96414346 5-248 244 -1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)