Contig : dd_Smed_v6_167_0_1 S. mediterranea

Id  dd_Smed_v6_167_0_1 Length  663    Open in Genome Browser

J Browse Displayer

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_523975.1 Drosophila melanogaster Ribosomal protein L14 6.0E-30 96-446 351 1
NP_080250.1 Mus musculus ribosomal protein L14 8.0E-27 96-458 363 1
XP_002741492.1 Saccoglossus kowalevskii 60S ribosomal protein L14-like 4.0E-37 96-446 351 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF50104 SSF IPR008991 Translation proteins SH3-like domain 9.13E-27 90-362 273 1
PTHR11127 PANTHER 60S RIBOSOMAL PROTEIN L14 9.7E-56 96-488 393 1
PF01929 PFAM IPR002784 Ribosomal protein L14 2.9E-25 216-434 219 1
G3DSA:2.30.30.30 GENE3D IPR014722   9.7E-27 90-338 249 1
PTHR11127:SF2 PANTHER 60S RIBOSOMAL PROTEIN L14 9.7E-56 96-488 393 1

2 ORFs

Contig Location Length Strand Sequence
78-491 414 1
537-662 126 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314356 3.1E-62 3 211.3 0.5942685 96-489 394 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)