Contig : dd_Smed_v6_16781_0_1 S. mediterranea

Id  dd_Smed_v6_16781_0_1 Length  425    Open in Genome Browser

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Homologue Displayer

Organism Field Displayer

Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_059498.2 Mus musculus dynein, axonemal, light chain 4 9.0E-31 93-350 258 1
NP_005731.1 Homo sapiens dynein, axonemal, light chain 4 1.0E-30 93-350 258 1
NP_610734.1 Drosophila melanogaster CG8407 gene product from transcript CG8407-RB 2.0E-27 87-353 267 1

4 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
G3DSA:3.30.740.10 GENE3D IPR001372 Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 4.0E-23 102-347 246 1
PTHR11886 PANTHER IPR001372 DYNEIN LIGHT CHAIN 3.3E-33 36-350 315 1
SSF54648 SSF DLC 4.19E-23 81-347 267 1
PF01221 PFAM IPR001372 Dynein light chain type 1 5.7E-25 99-347 249 1

3 ORFs

Contig Location Length Strand Sequence
36-353 318 1
98-256 159 -1
303-425 123 -1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF324136 1.4E-51 3 174.4 0.65882355 72-351 280 1
TF300264 3.6E-15 3 54.8 0.58117646 102-348 247 1
TF354234 7.1E-9 3 34.6 0.5105882 105-321 217 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)