Transcript : dd_Smed_v6_164_0_1 S. mediterranea

Length  518     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
Published Transcripts 
EST: AY067187.1, clone H.119.4c unknown mRNA sequence
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611693.1 Drosophila melanogaster Ribosomal protein S24 2.0E-43 77-364 288 1
XP_967577.1 Tribolium castaneum 40S ribosomal protein S24 2.0E-48 77-385 309 1
NP_001171757.1 Saccoglossus kowalevskii 40S ribosomal protein S24 2.0E-48 77-364 288 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54189 SSF IPR012678 Ribosomal proteins S24e, L23 and L15e 1.26E-35 95-388 294 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.5E-44 95-391 297 1
PTHR10496 PANTHER IPR001976 40S RIBOSOMAL PROTEIN S24 1.7E-75 62-460 399 1
PF01282 PFAM IPR001976 Ribosomal protein S24e 1.3E-33 143-379 237 1
PS00529 PROSITE IPR018098 Ribosomal protein S24e signature. 0.0 266-331 66 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

3 ORFs

Contig Location Length Strand Sequence
83-472 390 1
314-517 204 -1
68-205 138 -1

1 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314134 6.6E-70 2 233.9 0.73166025 96-474 379 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)