Contig : dd_Smed_v6_164_0_1 S. mediterranea

Id  dd_Smed_v6_164_0_1 Length  518    Open in Genome Browser

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Planmine Rnai Result Displayer

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Planmine Regeneration Time Course Displayer

Homologue Displayer

Organism Field Displayer

Genes

GO Displayer

SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
NP_611693.1 Drosophila melanogaster Ribosomal protein S24 2.0E-43 77-364 288 1
XP_967577.1 Tribolium castaneum 40S ribosomal protein S24 2.0E-48 77-385 309 1
NP_001171757.1 Saccoglossus kowalevskii 40S ribosomal protein S24 2.0E-48 77-364 288 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
SSF54189 SSF IPR012678 Ribosomal proteins S24e, L23 and L15e 1.26E-35 95-388 294 1
G3DSA:3.30.70.330 GENE3D IPR012677   1.5E-44 95-391 297 1
PTHR10496 PANTHER IPR001976 40S RIBOSOMAL PROTEIN S24 1.7E-75 62-460 399 1
PF01282 PFAM IPR001976 Ribosomal protein S24e 1.3E-33 143-379 237 1
PS00529 PROSITE IPR018098 Ribosomal protein S24e signature. 0.0 266-331 66 1

3 ORFs

Contig Location Length Strand Sequence
83-472 390 1
314-517 204 -1
68-205 138 -1

1 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF314134 6.6E-70 2 233.9 0.73166025 96-474 379 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)