Contig : dd_Smed_v6_16441_0_5 S. mediterranea

Id  dd_Smed_v6_16441_0_5 Length  1184    Open in Genome Browser

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Genes

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SequenceFeatures

3 Blast SequenceFeatures

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002404862.1 Ixodes scapularis reverse transcriptase, putative 3.0E-41 58-1146 1089 1
XP_003373748.1 Trichinella spiralis putative Ulp1 protease family, C- catalytic domain protein 9.0E-37 61-1149 1089 1
XP_004339617.1 Acanthamoeba castellanii str. Neff Reverse transcriptase 1.0E-35 55-1131 1077 1

5 Domain SequenceFeatures

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 6.5E-30 499-1152 654 1
PTHR19446:SF310 PANTHER SUBFAMILY NOT NAMED 1.5E-49 76-1143 1068 1
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 16.009 415-1182 768 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 1.5E-49 76-1143 1068 1
SSF56672 SSF DNA/RNA polymerases 1.84E-17 157-1146 990 1

8 ORFs

Contig Location Length Strand Sequence
1-1182 1182 1
666-1085 420 -1
81-395 315 -1
50-205 156 -1
1048-1182 135 -1
635-769 135 -1
413-544 132 -1
447-572 126 1

3 Treefam SequenceFeatures

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF321903 1.1E-18 1 64.9 0.7381757 273-1146 874 1
TF322238 7.1E-8 1 30.1 0.5760135 288-969 682 1
TF330254 1.1E-33 1 114.7 0.5608108 396-1059 664 1
 

Other

0 Publications




To cite PlanMine, please refer to the following publication:

Brandl, H., Moon, H., Vila-Farré, M., Liu, S.-Y., Henry, I., & Rink, J. C.
PlanMine - a mineable resource of planarian biology and biodiversity.
Nucleic Acids Research, gkv1148. doi:10.1093/nar/gkv1148 (2015)