Transcript : dd_Smed_v6_16441_0_5 S. mediterranea

Length  1184     Open in Genome Browser Source  Transcriptome assembly (Trinity v2.2.0)
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Organism Field Displayer

Association Displayer

Sequence Features

GO Displayer

3 Blast Sequence Features

Blast Target Species Blast Description evalue Contig Location Length Strand
XP_002404862.1 Ixodes scapularis reverse transcriptase, putative 3.0E-41 58-1146 1089 1
XP_003373748.1 Trichinella spiralis putative Ulp1 protease family, C- catalytic domain protein 9.0E-37 61-1149 1089 1
XP_004339617.1 Acanthamoeba castellanii str. Neff Reverse transcriptase 1.0E-35 55-1131 1077 1

5 Domain Sequence Features

Domain Type InterPro Domain Description Score Contig Location Length Strand
PF00078 PFAM IPR000477 Reverse transcriptase (RNA-dependent DNA polymerase) 6.5E-30 499-1152 654 1
PTHR19446:SF310 PANTHER SUBFAMILY NOT NAMED 1.5E-49 76-1143 1068 1
PS50878 PROFILE IPR000477 Reverse transcriptase (RT) catalytic domain profile. 16.009 415-1182 768 1
PTHR19446 PANTHER REVERSE TRANSCRIPTASES 1.5E-49 76-1143 1068 1
SSF56672 SSF DNA/RNA polymerases 1.84E-17 157-1146 990 1

Genomics

Predicted Gene Displayer

J Browse Displayer

Homologue Displayer

8 ORFs

Contig Location Length Strand Sequence
1-1182 1182 1
666-1085 420 -1
81-395 315 -1
50-205 156 -1
1048-1182 135 -1
635-769 135 -1
413-544 132 -1
447-572 126 1

3 Treefam Sequence Features

Gene Family Score Reading Frame Bit Score Coverage Contig Location Length Strand
TF321903 1.1E-18 1 64.9 0.7381757 273-1146 874 1
TF322238 7.1E-8 1 30.1 0.5760135 288-969 682 1
TF330254 1.1E-33 1 114.7 0.5608108 396-1059 664 1

Expression Information

Planmine Rnai Result Displayer

Planmine Anatomy Displayer

Planmine Cell Type Displayer

Planmine Single Cell Displayer

Planmine Timeseries Result Displayer

Planmine Regeneration Time Course Displayer

Planmine Additional Displayer




To cite PlanMine, please refer to the following publication:

Rozanski, A., Moon, H., Brandl, H., Martín-Durán, J. M., Grohme, M., Hüttner, K., Bartscherer, K., Henry, I., & Rink, J. C.
PlanMine 3.0—improvements to a mineable resource of flatworm biology and biodiversity
Nucleic Acids Research, gky1070. doi:10.1093/nar/gky1070 (2018)